# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09777.fasta.huge -Q ../query/KIAA0902.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0902, 910 aa vs ./tmplib.23663 library 1986595 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.5220+/-0.0077; mu= 13.4072+/- 0.526 mean_var=211.7862+/-49.487, 0's: 0 Z-trim: 7 B-trim: 0 in 0/40 Lambda= 0.088130 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0403 ( 416 res) hg01159 ( 416) 605 89.6 8.3e-19 KIAA1686 ( 1175 res) fh25862s1 (1175) 256 45.8 3.4e-05 KIAA0705 ( 1483 res) hg03359s1 (1483) 207 39.8 0.003 >>KIAA0403 ( 416 res) hg01159 (416 aa) initn: 529 init1: 529 opt: 605 Z-score: 429.5 bits: 89.6 E(): 8.3e-19 Smith-Waterman score: 605; 38.148% identity (65.926% similar) in 270 aa overlap (576-834:9-267) 550 560 570 580 590 600 KIAA09 VPETTLYHTFQQSSLQHKSKKKNKGPIAGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFS :.:::::::::..::.:::.:::. :..: KIAA04 KTQGFLTMSRRRISCKDLGHADCQGWLYKKKEKGSFLS 10 20 30 610 620 630 640 650 660 KIAA09 QKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFY .::::.: .:: .::::: :. :::.::..::.: ..:::::.::.::: ::.::.:: KIAA04 NKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPDFTVERASECKKKHAFKISHPQIKTFY 40 50 60 70 80 90 670 680 690 700 710 720 KIAA09 FAAEHLDDMNRWLNRINMLTAGYAERERIKQEQDYWSESDKEEADTPSTPKQDSPPPPYD ::::....:: :::. : .. ..: .... .:::..:. . . ..::::. KIAA04 FAAENVQEMNVWLNK---LGSAVIHQESTTKDEECYSESEQEDPEIAA----ETPPPPHA 100 110 120 130 140 150 730 740 750 760 770 KIAA09 TYPRP---PSMSCASPYVEAKHSRLSSTET-----SQSQSSHEEFRQEVTGSSAVSPIRK . . . : .:: . . .:: :. :. :: . :: . . . KIAA04 SQTQSLTAQQASSSSPSLSGTSYSFSSLENTVKTPSSFPSSLSKERQSLPDTVNSLSAAE 160 170 180 190 200 210 780 790 800 810 820 830 KIAA09 TASQRRSWQDLIETPLTS-SGLHYLQTLPLEDS-VFSDSAAI-SPEHRRQSTLPTQKCHL .: .. ...:. : .:.: ::.: : :.:. . : :.: ... :: KIAA04 DEGQPITFAVQVHSPVPSEAGIHK----ALENSFVTSESGFLNSLSSDDTSSLSSNHDHL 220 230 240 250 260 840 850 860 870 880 890 KIAA09 QDHYGPYPLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLMLQLVPVTHRMTCNPQRWR KIAA04 TVPDKPAGSKIMDKEETKVSEDDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCK 270 280 290 300 310 320 >>KIAA1686 ( 1175 res) fh25862s1 (1175 aa) initn: 217 init1: 126 opt: 256 Z-score: 185.0 bits: 45.8 E(): 3.4e-05 Smith-Waterman score: 268; 23.885% identity (51.969% similar) in 381 aa overlap (549-900:132-497) 520 530 540 550 560 570 KIAA09 KSNSPTHYSLLPSLQMDALRQDIMGTPVPETTLYHTFQQSSLQHKSKKKNKGPIAGKSKR :. : . .: . . :. ..: :: . KIAA16 VNEQTVATMTSEEKKERPISMINEASNYNVTSDYAVHPMSPVGRTSRASKKVHNFGKRSN 110 120 130 140 150 160 580 590 600 610 620 630 KIAA09 RISCKDLGRGDCEGWLWKKKDAKSYFSQKWKKYWFVLKDASLYWYINEEDEKAEGFISLP :. . . .:::.:. :. .. . ::: ::::.: :..: .:..: : : :: KIAA16 SIKRNPNAPVVRRGWLYKQ-DSTGM--KLWKKRWFVLSDLCLFYYRDEKEEGILGSILLP 170 180 190 200 210 640 650 660 670 680 690 KIAA09 EFKI---DRASECRKKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINMLTAGYAERERIK :.: .. .:::::: ::.....:: .. .:. :.. :: :. .. : .: KIAA16 SFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMK--AMLDAALVQTEPVK 220 230 240 250 260 270 700 710 720 730 740 KIAA09 QEQDYWSES--DKEEADTPSTPKQDSPPPPYDTYPRPPSMSCASPYVEAKH--------- . . ::. :: . :. .: . . : . .::.. KIAA16 RVDKITSENAPTKETNNIPNHRVLIKPEIQNNQKNKEMSKIEEKKALEAEKYGFQKDGQD 280 290 300 310 320 330 750 760 770 780 790 800 KIAA09 ---SRLSSTETSQSQSSHEEFRQEVTGSSAVSPIRKTASQRRSWQDLIETPLTS-SGLHY ....:.. .. : .: . . :: ..:. . .... :.. : . KIAA16 RPLTKINSVKLNSLPSEYESGSACPAQTVHYRPINLSSSENK----IVNVSLADLRGGNR 340 350 360 370 380 390 810 820 830 840 850 KIAA09 LQTLPL---EDSVFSDSAAISPEHRRQSTLPTQKCHLQDHYG-------PYPLAESERMQ .: :: : :.. . ... . .. . . : .. : : . :.: : KIAA16 PNTGPLYTEADRVIQRTNSMQ-QLEQWIKIQKGRGHEEETRGVISYQTLPRNMP-SHRAQ 400 410 420 430 440 450 860 870 880 890 900 KIAA09 VLNGNGGKPRSF-TLPRDSGFNHCCLMLQLVPVTHRMTCNPQRWRKRRRRRRRKGRQQGK .. . :... ::::.: . ...: :: : .: .::: : KIAA16 IM---ARYPEGYRTLPRNSKTRPESIC-SVTPSTHDKTLGPGAEEKRRSMRDDTMWQLYE 460 470 480 490 500 910 KIAA09 T KIAA16 WQQRQFYNKQSTLPRHSTLSSPKTMVNISDQTMHSIPTSPSHGSIAAYQGYSPQRTYRSE 510 520 530 540 550 560 >>KIAA0705 ( 1483 res) hg03359s1 (1483 aa) initn: 197 init1: 110 opt: 207 Z-score: 150.3 bits: 39.8 E(): 0.003 Smith-Waterman score: 212; 32.143% identity (60.714% similar) in 140 aa overlap (239-366:954-1091) 210 220 230 240 250 KIAA09 SGVCDHIISLSSDPLVSQSAHLEVIQLANIKPSEGLGMYIKSTYD----GL-----HVIT : .::.:. : :. . : : : KIAA07 SNHAAPSSNASPPEGFASHSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIG 930 940 950 960 970 980 260 270 280 290 300 310 KIAA09 GTTENSPADRCKKIHAGDEVIQVNHQTVVGWQLKNLVNALREDPSGVILTLKKRPQSMLT ..:::::: :...::... :: :.... ..:. ... .:. .::. :: :. KIAA07 RIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD--AGLSVTLRIIPQEELN 990 1000 1010 1020 1030 1040 320 330 340 350 360 370 KIAA09 SAPALLKNMRWKPLALQ-PLIPRSPTS--SVATPSSTISTPTKRDSSALQDLYIPPPPAE : . .. . .:.: : :: .:: . : :::.: :. :. . :: KIAA07 SPTSAPSSEKQSPMAQQSPLAQQSPLAQPSPATPNSPIAQPAPPQPLQLQGHENSYRSEV 1050 1060 1070 1080 1090 1100 380 390 400 410 420 430 KIAA09 PYIPRDEKGNLPCEDLRGHMVGKPVHKGSESPNSFLDQEYRKRFNIVEEDTVLYCYEYEK KIAA07 KARQDVKPDIRQPPFTDYRQPPLDYRQPPGGDYQQPPPLDYRQPPLLDYRQHSPDTRQYP 1110 1120 1130 1140 1150 1160 910 residues in 1 query sequences 1986595 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:45 2008 done: Thu Dec 18 15:20:46 2008 Total Scan time: 0.630 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]