hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16183102/chunk_1/iprscan-20080502-16183102.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0901 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00850.10.ls Histone deacetylase domain 682.9 2.3e-202 2 PF00850.10.fs Histone deacetylase domain 678.8 3.9e-201 2 PF02148.9.ls Zn-finger in ubiquitin-hydrolases and o 107.6 3.5e-29 1 PF02148.9.fs Zn-finger in ubiquitin-hydrolases and o 105.7 6.3e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00850.10.fs 1/2 103 422 .. 1 347 [] 314.9 1.3e-91 PF00850.10.ls 1/2 103 422 .. 1 347 [] 316.9 3.2e-92 PF00850.10.fs 2/2 498 818 .. 1 347 [] 363.9 2.4e-106 PF00850.10.ls 2/2 498 818 .. 1 347 [] 365.9 5.9e-107 PF02148.9.fs 1/1 1151 1222 .. 1 82 [] 105.7 6.3e-29 PF02148.9.ls 1/1 1151 1222 .. 1 82 [] 107.6 3.5e-29 Alignments of top-scoring domains: PF00850.10.fs: domain 1 of 2, from 103 to 422: score 314.9, E = 1.3e-91 *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm ++ v+d+++ ++h + + +pe peRl +i+e+L+ +gll+++ KIAA0901 103 GTGLVLDEQLNEFH---CLWDDSFPEGPERLHAIKEQLIQEGLLDRC 146 eivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeielk ++ +r a eel lvHs +y++ +e + +n+ +l+ l KIAA0901 147 VSFQ----ARFAEKEELMLVHSLEYIDLMETTQYMNEGELRV------LA 186 yfnvgdDtpvfaglyeaaqlsvGgaldaadrllegeldiainwagGPgHH ++ +d++++ +++y+ a l+ G +l+++d++l e ++ + +++PgHH KIAA0901 187 DT--YDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHH 234 AkkgeasGFCylNniAiAIlellkkyPyveRvliiDiDvHHGDGTQeiFY A ++ G+C +N +A+A++++++k +Rvli+D+DvHHG GTQ+ F+ KIAA0901 235 AQHSLMDGYCMFNHVAVAARYAQQKH-RIRRVLIVDWDVHHGQGTQFTFD 283 nddrVltvSfHkygkGefFPGTieGditeiGkgkGkgytlNiPLledGtd +d+ Vl++S+H+y+ G f+P+ ++ +G g+G gyt+N+P++ G++ KIAA0901 284 QDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMR 333 DesYleafktiiepvleqFkPdaivvsaGfDalegDptmqLgsfnLTieg D++Y++af +++ pv+ +F+P++++v aGfDal gDp g+++ T+ g KIAA0901 334 DADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDP---KGEMAATPAG 380 ygeivrflkslaqkhcdgpllvVlEGGYtlraiasavarcwialtggllg ++ +++l+ la +g+l++ lEGGY+lr a+a + a + llg KIAA0901 381 FAQLTHLLMGLA----GGKLILSLEGGYNLR----ALAEGVSASLHTLLG 422 <-* KIAA0901 - - PF00850.10.ls: domain 1 of 2, from 103 to 422: score 316.9, E = 3.2e-92 *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm ++ v+d+++ ++h + + +pe peRl +i+e+L+ +gll+++ KIAA0901 103 GTGLVLDEQLNEFH---CLWDDSFPEGPERLHAIKEQLIQEGLLDRC 146 eivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeielk ++ +r a eel lvHs +y++ +e + +n+ +l+ l KIAA0901 147 VSFQ----ARFAEKEELMLVHSLEYIDLMETTQYMNEGELRV------LA 186 yfnvgdDtpvfaglyeaaqlsvGgaldaadrllegeldiainwagGPgHH ++ +d++++ +++y+ a l+ G +l+++d++l e ++ + +++PgHH KIAA0901 187 DT--YDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHH 234 AkkgeasGFCylNniAiAIlellkkyPyveRvliiDiDvHHGDGTQeiFY A ++ G+C +N +A+A++++++k +Rvli+D+DvHHG GTQ+ F+ KIAA0901 235 AQHSLMDGYCMFNHVAVAARYAQQKH-RIRRVLIVDWDVHHGQGTQFTFD 283 nddrVltvSfHkygkGefFPGTieGditeiGkgkGkgytlNiPLledGtd +d+ Vl++S+H+y+ G f+P+ ++ +G g+G gyt+N+P++ G++ KIAA0901 284 QDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMR 333 DesYleafktiiepvleqFkPdaivvsaGfDalegDptmqLgsfnLTieg D++Y++af +++ pv+ +F+P++++v aGfDal gDp g+++ T+ g KIAA0901 334 DADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDP---KGEMAATPAG 380 ygeivrflkslaqkhcdgpllvVlEGGYtlraiasavarcwialtggllg ++ +++l+ la +g+l++ lEGGY+lr a+a + a + llg KIAA0901 381 FAQLTHLLMGLA----GGKLILSLEGGYNLR----ALAEGVSASLHTLLG 422 <-* KIAA0901 - - PF00850.10.fs: domain 2 of 2, from 498 to 818: score 363.9, E = 2.4e-106 *->tvayvydpevlnyhfktisyg..agHpenpeRlrlihelLleygllk +++ vyd+++ n+ + + Hpe p+R+++i+ L e gl+ KIAA0901 498 RTGLVYDQNMMNHC-----NLwdSHHPEVPQRILRIMCRLEELGLAG 539 kmeivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeie +++ +t pr+at++ell Hs +yv l+ +++++ +l + e KIAA0901 540 RCLTLT----PRPATEAELLTCHSAEYVGHLRATEKMKTRELHR-----E 580 lkyfnvgdDtpvfaglyeaaqlsvGgaldaadrllegeldiainwagGPg ++f d++++ + +++ aql++G+a ++++++l+ge+ ++ +++++Pg KIAA0901 581 SSNF---DSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPG 627 HHAkkgeasGFCylNniAiAIlellkkyPyve.RvliiDiDvHHGDGTQe HHA+ + a+GFC++N +A+A++++++ +++ R+li+D+DvHHG+GTQ KIAA0901 628 HHAEQDAACGFCFFNSVAVAARHAQTIS-GHAlRILIVDWDVHHGNGTQH 676 iFYnddrVltvSfHkygkGefFPGTieGditeiGkgkGkgytlNiPLled F++d+ Vl+vS+H+y++G+fFP eG +iG +G g+t+N+ ++++ KIAA0901 677 MFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGP 726 GtdDesYleafktiiepvleqFkPdaivvsaGfDalegDptmqLgsfnLT ++D++Yl+a+ + p++ +F+P++++vsaGfDa +gDp Lg+++++ KIAA0901 727 RMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDP---LGGCQVS 773 iegygeivrflkslaqkhcdgpllvVlEGGYtlraiasavarcwialtgg +egy++ +++l+ la+ g++++ lEGGY+l ++ + +a t+ KIAA0901 774 PEGYAHLTHLLMGLAS----GRIILILEGGYNLT----SISESMAACTRS 815 llg<-* llg KIAA0901 816 LLG 818 PF00850.10.ls: domain 2 of 2, from 498 to 818: score 365.9, E = 5.9e-107 *->tvayvydpevlnyhfktisyg..agHpenpeRlrlihelLleygllk +++ vyd+++ n+ + + Hpe p+R+++i+ L e gl+ KIAA0901 498 RTGLVYDQNMMNHC-----NLwdSHHPEVPQRILRIMCRLEELGLAG 539 kmeivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeie +++ +t pr+at++ell Hs +yv l+ +++++ +l + e KIAA0901 540 RCLTLT----PRPATEAELLTCHSAEYVGHLRATEKMKTRELHR-----E 580 lkyfnvgdDtpvfaglyeaaqlsvGgaldaadrllegeldiainwagGPg ++f d++++ + +++ aql++G+a ++++++l+ge+ ++ +++++Pg KIAA0901 581 SSNF---DSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPG 627 HHAkkgeasGFCylNniAiAIlellkkyPyve.RvliiDiDvHHGDGTQe HHA+ + a+GFC++N +A+A++++++ +++ R+li+D+DvHHG+GTQ KIAA0901 628 HHAEQDAACGFCFFNSVAVAARHAQTIS-GHAlRILIVDWDVHHGNGTQH 676 iFYnddrVltvSfHkygkGefFPGTieGditeiGkgkGkgytlNiPLled F++d+ Vl+vS+H+y++G+fFP eG +iG +G g+t+N+ ++++ KIAA0901 677 MFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGP 726 GtdDesYleafktiiepvleqFkPdaivvsaGfDalegDptmqLgsfnLT ++D++Yl+a+ + p++ +F+P++++vsaGfDa +gDp Lg+++++ KIAA0901 727 RMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDP---LGGCQVS 773 iegygeivrflkslaqkhcdgpllvVlEGGYtlraiasavarcwialtgg +egy++ +++l+ la+ g++++ lEGGY+l ++ + +a t+ KIAA0901 774 PEGYAHLTHLLMGLAS----GRIILILEGGYNLT----SISESMAACTRS 815 llg<-* llg KIAA0901 816 LLG 818 PF02148.9.fs: domain 1 of 1, from 1151 to 1222: score 105.7, E = 6.3e-29 *->CvstCgltenlWlCLtCGqvgCGryqylgdGgngHaleHyretgHpl C + Cg+ +++W+CL+C+qv+CGry +ngH+l+H+ ++gHpl KIAA0901 1151 C-GDCGTIQENWVCLSCYQVYCGRY------INGHMLQHHGNSGHPL 1190 avklktqstwcyacdaYvhqeddeedalDgkylvd<-* ++++ ++s wcy+c+aYvh++ +++ +++ +++ KIAA0901 1191 VLSYIDLSAWCYYCQAYVHHQALLD--VKNI-AHQ 1222 PF02148.9.ls: domain 1 of 1, from 1151 to 1222: score 107.6, E = 3.5e-29 *->CvstCgltenlWlCLtCGqvgCGryqylgdGgngHaleHyretgHpl C + Cg+ +++W+CL+C+qv+CGry +ngH+l+H+ ++gHpl KIAA0901 1151 C-GDCGTIQENWVCLSCYQVYCGRY------INGHMLQHHGNSGHPL 1190 avklktqstwcyacdaYvhqeddeedalDgkylvd<-* ++++ ++s wcy+c+aYvh++ +++ +++ +++ KIAA0901 1191 VLSYIDLSAWCYYCQAYVHHQALLD--VKNI-AHQ 1222 //