# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09716.fasta.huge -Q ../query/KIAA0901.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0901, 1233 aa vs ./tmplib.23663 library 1986272 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.2410+/-0.00642; mu= 11.9895+/- 0.439 mean_var=146.5101+/-34.349, 0's: 0 Z-trim: 5 B-trim: 2 in 1/39 Lambda= 0.105960 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0288 ( 1097 res) ha06116(revised) (1097) 774 131.0 1e-30 KIAA0600 ( 1080 res) fh08981 (1080) 732 124.6 8.5e-29 KIAA1003 ( 917 res) hk09911 ( 917) 186 41.0 0.001 >>KIAA0288 ( 1097 res) ha06116(revised) (1097 aa) initn: 860 init1: 430 opt: 774 Z-score: 643.5 bits: 131.0 E(): 1e-30 Smith-Waterman score: 1030; 45.750% identity (69.250% similar) in 400 aa overlap (483-853:658-1045) 460 470 480 490 500 510 KIAA09 WEVLVRSTETVERDNMEEDNVEESEEEGPWEPPVLPILTWPVLQSRTGLVYDQNMMNH-C :::. : .: :::::: :..: : KIAA02 AGIPVSFGGHRPLSRAQSSPASATFPVSVQEPPTKPRFT-------TGLVYDTLMLKHQC 630 640 650 660 670 680 520 530 540 550 560 570 KIAA09 NLWDSH-HPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLRATE . .: ::: :: : ::.: :: :.: . : :: :: : :: .. : .:. KIAA02 TCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHT-LLYGTN 690 700 710 720 730 580 590 600 610 KIAA09 KMKTRELHRES--SNFDSIYI---CPS-------------TFACAQLATGAACRLVEAVL .. ..: .. ... :... : . . . :.::.: . .:: : KIAA02 PLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVA 740 750 760 770 780 790 620 630 640 650 660 670 KIAA09 SGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARH-AQTISGHALRILIVDWDVHHG .::. :: :::::::::::... :::.::::::::. : .: . .::::::::::: KIAA02 TGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLS--VSKILIVDWDVHHG 800 810 820 830 840 850 680 690 700 710 720 KIAA09 NGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNG---PRM ::::. : .::::::.:::::: :.::: :: ...: . :.::.::.:..: : : KIAA02 NGTQQAFYSDPSVLYMSLHRYDDGNFFP--GSGAPDEVGTGPGVGFNVNMAFTGGLDPPM 860 870 880 890 900 910 730 740 750 760 770 780 KIAA09 GDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDP--LGGCQVSPEGYAHLTHLLMG :::.::::.. .:.::: :: :..::::.::::..: : ::: ..: . ...::. ::: KIAA02 GDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMG 920 930 940 950 960 970 790 800 810 820 830 840 KIAA09 LASGRIILILEGGYNLTSISESMAACTRSLLG---DPPPLLTLPRPPLSGALASITETIQ ::.:::.: ::::..::.: .. ::. .::: :: : .: . : ..:. :. .... KIAA02 LAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVME 980 990 1000 1010 1020 1030 850 860 870 880 890 900 KIAA09 VHRRYWRSLRVMKVEDREGPSSSKLVTKKAPQPAKPRLAERMTTREKKVLEAGMGKVTSA .: .::: :. KIAA02 IHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVTAMASLSVGVKPAEKRPDEEPMEEEP 1040 1050 1060 1070 1080 1090 >>KIAA0600 ( 1080 res) fh08981 (1080 aa) initn: 939 init1: 395 opt: 732 Z-score: 608.8 bits: 124.6 E(): 8.5e-29 Smith-Waterman score: 851; 46.886% identity (78.022% similar) in 273 aa overlap (585-849:747-1016) 560 570 580 590 600 610 KIAA09 LTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSG :... . . ...:.: .:. : .: KIAA06 DQPVKHLFTTGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAG 720 730 740 750 760 770 620 630 640 650 660 670 KIAA09 EVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVDWDVHHGNGT :. :: :..::::::::...: :::::::::..:. : . .. ..::::::.:::::: KIAA06 ELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQ-KLNVGKVLIVDWDIHHGNGT 780 790 800 810 820 830 680 690 700 710 720 730 KIAA09 QHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNG---PRMGDA :. : .::::::.::::::.:.::: :: ..: . :.:..:::::.: : .::. KIAA06 QQAFYNDPSVLYISLHRYDNGNFFP--GSGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDV 840 850 860 870 880 890 740 750 760 770 780 KIAA09 DYLAAWHRLVLPIAYEFNPELVLVSAGFDAARG--DPLGGCQVSPEGYAHLTHLLMGLAS .::.:.. .:.:::.::.:..:::::::::..: .:::: .:. . ..:::. :: ::. KIAA06 EYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAG 900 910 920 930 940 950 790 800 810 820 830 840 KIAA09 GRIILILEGGYNLTSISESMAACTRSLLG-DPPPL--LTLPRPPLSGALASITETIQVHR ::..: ::::..::.: .. ::. .::. . :: .: . : .:.:.. ..:... KIAA06 GRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVIEIQS 960 970 980 990 1000 1010 850 860 870 880 890 900 KIAA09 RYWRSLRVMKVEDREGPSSSKLVTKKAPQPAKPRLAERMTTREKKVLEAGMGKVTSASFG ..: KIAA06 KHWSCVQKFAAGLGRSLREAQAGETEEAETVSAMALLSVGAEQAQAAAAREHSPRPAEEP 1020 1030 1040 1050 1060 1070 >>KIAA1003 ( 917 res) hk09911 (917 aa) initn: 145 init1: 119 opt: 186 Z-score: 158.6 bits: 41.0 E(): 0.001 Smith-Waterman score: 186; 29.630% identity (51.852% similar) in 108 aa overlap (1131-1232:12-119) 1110 1120 1130 1140 1150 KIAA09 GQDMADSMLMQGSRGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQP--CGDCGTIQ :::: .. . : . . : .::. KIAA10 AQARMGDSRDLCPHLDSIGEVTKEDLLLKSKGTCQSCGVTG 10 20 30 40 1160 1170 1180 1190 1200 1210 KIAA09 EN-WVCL--SCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLD : :.:: .: : ::. . : : . : :... . ::: :. : . : KIAA10 PNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYACEKEVFLEQRLA 50 60 70 80 90 100 1220 1230 KIAA09 VKNIAHQNKFGE-DMPHPH . .. ..::.: : : : KIAA10 APLLGSSSKFSEQDSPPPSHPLKAVPIAVADEGESESEDDDLKPRGLTGMKNLGNSCYMN 110 120 130 140 150 160 1233 residues in 1 query sequences 1986272 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:43 2008 done: Thu Dec 18 15:20:44 2008 Total Scan time: 0.760 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]