hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16150604/chunk_1/iprscan-20080502-16150604.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0899 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01602.10.ls Adaptin N terminal region 719.4 2.3e-213 1 PF01602.10.fs Adaptin N terminal region 717.3 9.5e-213 1 PF02296.7.fs Alpha adaptin AP2, C-terminal domain 330.8 1.4e-108 1 PF02296.7.ls Alpha adaptin AP2, C-terminal domain 332.8 5.6e-97 1 PF02883.10.fs Adaptin C-terminal domain 130.1 5.3e-39 1 PF02883.10.ls Adaptin C-terminal domain 132.0 1.6e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01602.10.fs 1/1 29 590 .. 1 630 [] 717.3 9.5e-213 PF01602.10.ls 1/1 29 590 .. 1 630 [] 719.4 2.3e-213 PF02883.10.fs 1/1 707 820 .. 1 125 [] 130.1 5.3e-39 PF02883.10.ls 1/1 707 820 .. 1 125 [] 132.0 1.6e-36 PF02296.7.fs 1/1 826 938 .. 1 113 [] 330.8 1.4e-108 PF02296.7.ls 1/1 826 938 .. 1 113 [] 332.8 5.6e-97 Alignments of top-scoring domains: PF01602.10.fs: domain 1 of 1, from 29 to 590: score 717.3, E = 9.5e-213 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf e k+i++ela+i+++fk dK+Ld+y+kk++v+Kl+++++lG +di+f KIAA0899 29 EIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDIDF 74 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn +++e+v+l++s++ +++K++g YL++++l +++++ l++L++n KIAA0899 75 GHMEAVNLLSSNR-YTEKQIG-----YLFISVLVNSNSE----LIRLINN 114 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV +ik+DL s+Np ++glAL++++s++++e+a+++a +i+k lv ++++++V KIAA0899 115 AIKNDLASRNPTFMGLALHCIASVGSREMAEAFAGEIPKVLVAGDTMDSV 164 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde +++Aal++l+Lyr +p+lv+++++++++++lL+ D++ gVv+aA+++++ KIAA0899 165 KQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-DQHLGVVTAATSLITT 213 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf ++ +np+ ++++ +l v+ rl+r++++a +dl+++++++vp+p+ KIAA0899 214 LAQKNPEEFKTSV-----SLAVS--RLSRIVTSASTDLQDYTYYFVPAPW 256 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk l vkL+ r +l+ ++++pdp++ + +l e+l+ il++++ ++++k KIAA0899 257 LSVKLL---R-LLQ-CYPPPDPAV---RGRLTECLETILNKAQEPPKSKK 298 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva vqh+n++navlfe++++i+++ds+p+l+v+a+n+L+++L ++++nlrY+a KIAA0899 299 VQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLA 348 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl L++++++++se++++ av++h ++++ l+t++d+s+r+ra+dl KIAA0899 349 LESMCTLASSEFSHE-------AVKTHIETVINALKTERDVSVRQRAVDL 391 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn Ly+++d+sN+++iv e+++y+e+ad + +++++v ++++++ek KIAA0899 392 LYAMCDRSNAPQIVAEMLSYLETAD-Y-----SIREEIVLKVAILAEK-- 433 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV ++ d++w++d++l+L++ +ag+yv +e++++ +i+i+++++++++ya+ KIAA0899 434 --YAVDYTWYVDTILNLIR-IAGDYVSEEVWYR-VIQIVINRDDVQGYAA 479 sqiitlLaallesiesmpearaaaiWilGEygelipdiapceesepseve +t+++al++++++ ++++++ +ilGE+g+li ++ +s p+ KIAA0899 480 ---KTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGD---PRSSPL--- 519 sdidllreiaenfslenlevraqlLtalvKLgltkpdikqQeeiqpveel ++ +++++f+l++ +ra+lL++++K+ +++p+ v++ KIAA0899 520 ---IQFHLLHSKFHLCSVPTRALLLSTYIKFVNLFPE---------VKPT 557 iqsvls..lalnssdnelElRDRAreylrllslad<-* iq+vl ++++l+++d +El++RA+eylrl + a+ KIAA0899 558 IQDVLRsdSQLRNAD--VELQQRAVEYLRLSTVAS 590 PF01602.10.ls: domain 1 of 1, from 29 to 590: score 719.4, E = 2.3e-213 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf e k+i++ela+i+++fk dK+Ld+y+kk++v+Kl+++++lG +di+f KIAA0899 29 EIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDIDF 74 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn +++e+v+l++s++ +++K++g YL++++l +++++ l++L++n KIAA0899 75 GHMEAVNLLSSNR-YTEKQIG-----YLFISVLVNSNSE----LIRLINN 114 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV +ik+DL s+Np ++glAL++++s++++e+a+++a +i+k lv ++++++V KIAA0899 115 AIKNDLASRNPTFMGLALHCIASVGSREMAEAFAGEIPKVLVAGDTMDSV 164 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde +++Aal++l+Lyr +p+lv+++++++++++lL+ D++ gVv+aA+++++ KIAA0899 165 KQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-DQHLGVVTAATSLITT 213 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf ++ +np+ ++++ +l v+ rl+r++++a +dl+++++++vp+p+ KIAA0899 214 LAQKNPEEFKTSV-----SLAVS--RLSRIVTSASTDLQDYTYYFVPAPW 256 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk l vkL+ r +l+ ++++pdp++ + +l e+l+ il++++ ++++k KIAA0899 257 LSVKLL---R-LLQ-CYPPPDPAV---RGRLTECLETILNKAQEPPKSKK 298 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva vqh+n++navlfe++++i+++ds+p+l+v+a+n+L+++L ++++nlrY+a KIAA0899 299 VQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLA 348 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl L++++++++se++++ av++h ++++ l+t++d+s+r+ra+dl KIAA0899 349 LESMCTLASSEFSHE-------AVKTHIETVINALKTERDVSVRQRAVDL 391 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn Ly+++d+sN+++iv e+++y+e+ad + +++++v ++++++ek KIAA0899 392 LYAMCDRSNAPQIVAEMLSYLETAD-Y-----SIREEIVLKVAILAEK-- 433 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV ++ d++w++d++l+L++ +ag+yv +e++++ +i+i+++++++++ya+ KIAA0899 434 --YAVDYTWYVDTILNLIR-IAGDYVSEEVWYR-VIQIVINRDDVQGYAA 479 sqiitlLaallesiesmpearaaaiWilGEygelipdiapceesepseve +t+++al++++++ ++++++ +ilGE+g+li ++ +s p+ KIAA0899 480 ---KTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGD---PRSSPL--- 519 sdidllreiaenfslenlevraqlLtalvKLgltkpdikqQeeiqpveel ++ +++++f+l++ +ra+lL++++K+ +++p+ v++ KIAA0899 520 ---IQFHLLHSKFHLCSVPTRALLLSTYIKFVNLFPE---------VKPT 557 iqsvls..lalnssdnelElRDRAreylrllslad<-* iq+vl ++++l+++d +El++RA+eylrl + a+ KIAA0899 558 IQDVLRsdSQLRNAD--VELQQRAVEYLRLSTVAS 590 PF02883.10.fs: domain 1 of 1, from 707 to 820: score 130.1, E = 5.3e-39 *->pkpawlpsivvyessgLqIgltferrgpespglgritltftNkssqp ++++++++v++e++ LqIgl++e+r ++lgr+ ++++Nk+s++ KIAA0899 707 ARFVCKNNGVLFENQLLQIGLKSEFR----QNLGRMFIFYGNKTSTQ 749 itnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqPaitQvlrvsnpqdnk + nf++++ + +l+ L++q+++v p++ +gaq ++Qv ++++++d++ KIAA0899 750 FLNFTPTLICSDDLQPNLNLQTKPVDPTVEGGAQ--VQQVVNIECVSDFT 797 kplrlrikltYnlggqsvqeqgevsklP<-* ++++l+i+++Y +++q+++ +lP KIAA0899 798 EAPVLNIQFRYG---GTFQNVS--VQLP 820 PF02883.10.ls: domain 1 of 1, from 707 to 820: score 132.0, E = 1.6e-36 *->pkpawlpsivvyessgLqIgltferrgpespglgritltftNkssqp ++++++++v++e++ LqIgl++e+r ++lgr+ ++++Nk+s++ KIAA0899 707 ARFVCKNNGVLFENQLLQIGLKSEFR----QNLGRMFIFYGNKTSTQ 749 itnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqPaitQvlrvsnpqdnk + nf++++ + +l+ L++q+++v p++ +gaq ++Qv ++++++d++ KIAA0899 750 FLNFTPTLICSDDLQPNLNLQTKPVDPTVEGGAQ--VQQVVNIECVSDFT 797 kplrlrikltYnlggqsvqeqgevsklP<-* ++++l+i+++Y +++q+++ +lP KIAA0899 798 EAPVLNIQFRYG---GTFQNVS--VQLP 820 PF02296.7.fs: domain 1 of 1, from 826 to 938: score 330.8, E = 1.4e-108 *->FFePTeMaaedFFqRWKqLSapqQeaQKIFkAahPlDlevtkaKLlG FF+PTeMa++dFFqRWKqLS+pqQe+Q+IFkA+hP+D+evtkaK++G KIAA0899 826 FFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEVTKAKIIG 872 FGsaLLddVDPNPdNfVcAGIIhTqtqQvGCLlRLEPNkQAqMYRLTlRt FGsaLL++VDPNP+NfV+AGIIhT+t+Q+GCLlRLEPN+QAqMYRLTlRt KIAA0899 873 FGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRT 922 SKdTVsreLcdLLtdQ<-* SK+ Vs++Lc+LL+ Q KIAA0899 923 SKEAVSQRLCELLSAQ 938 PF02296.7.ls: domain 1 of 1, from 826 to 938: score 332.8, E = 5.6e-97 *->FFePTeMaaedFFqRWKqLSapqQeaQKIFkAahPlDlevtkaKLlG FF+PTeMa++dFFqRWKqLS+pqQe+Q+IFkA+hP+D+evtkaK++G KIAA0899 826 FFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEVTKAKIIG 872 FGsaLLddVDPNPdNfVcAGIIhTqtqQvGCLlRLEPNkQAqMYRLTlRt FGsaLL++VDPNP+NfV+AGIIhT+t+Q+GCLlRLEPN+QAqMYRLTlRt KIAA0899 873 FGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRT 922 SKdTVsreLcdLLtdQ<-* SK+ Vs++Lc+LL+ Q KIAA0899 923 SKEAVSQRLCELLSAQ 938 //