# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09524.fasta.huge -Q ../query/KIAA0897.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0897, 419 aa vs ./tmplib.23663 library 1987086 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.8610+/-0.00509; mu= 15.9545+/- 0.347 mean_var=94.7162+/-23.287, 0's: 0 Z-trim: 4 B-trim: 150 in 1/39 Lambda= 0.131784 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0654 ( 1267 res) fh18335 (1267) 1849 361.8 1.4e-100 KIAA1230 ( 932 res) fh06860s1 ( 932) 370 80.4 5e-16 >>KIAA0654 ( 1267 res) fh18335 (1267 aa) initn: 1838 init1: 1759 opt: 1849 Z-score: 1897.8 bits: 361.8 E(): 1.4e-100 Smith-Waterman score: 1849; 66.995% identity (85.714% similar) in 406 aa overlap (1-406:850-1251) 10 20 30 KIAA08 GRLIQLSRDGATGHVLLTDSEFSMQEPMVP ::. .::... .: : .:. KIAA06 SEGTPDSLHKAPKKKSIKSSIGRLFGKKEKGRMGPPGRDSSSLAGTPSD-ETLATDPLGL 820 830 840 850 860 870 40 50 60 70 80 90 KIAA08 AKLGTQAEKDRRLKKKHQLLEDARRKGMPFAQWDGPTVVSWLELWVGMPAWYVAACRANV ::: ..:::: :.::.:::.: :.:.::: :::::::::::::::::::::::::::: KIAA06 AKLTGPGDKDRRNKRKHELLEEACRQGLPFAAWDGPTVVSWLELWVGMPAWYVAACRANV 880 890 900 910 920 930 100 110 120 130 140 150 KIAA08 KSGAIMSALSDTEIQREIGISNALHRLKLRLAIQEMVSLTSPSAPPTSRTSSGNVWVTHE ::::::. :::::::::::::: :::::::::::::::::::::: .::::.::::.::: KIAA06 KSGAIMANLSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPASSRTSTGNVWMTHE 940 950 960 970 980 990 160 170 180 190 200 210 KIAA08 EMETLETSTKTDSEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLD :::.: ..:: ...: :: : ::::::::::.::.:::::::::::::::: :::::::: KIAA06 EMESLTATTKPETKEISWEQILAYGDMNHEWVGNDWLPSLGLPQYRSYFMESLVDARMLD 1000 1010 1020 1030 1040 1050 220 230 240 250 260 270 KIAA08 HLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELEKRREESQHEIKDVLVWTNDQ ::.::.:: .:::::::::.::.::::::::::::::.::.:::::: .:.::.::.:.. KIAA06 HLNKKELRGQLKMVDSFHRVSLHYGIMCLKRLNYDRKDLERRREESQTQIRDVMVWSNER 1060 1070 1080 1090 1100 1110 280 290 300 310 320 330 KIAA08 VVHWVQSIGLRDYAGNLHESGVHGALLALDENFDHNTLALILQIPTQNTQARQVMEREFN :. ::...::...: :: :::::::::::::.::.. :::.:::::::.::::..:.::. KIAA06 VMGWVSGLGLKEFATNLTESGVHGALLALDETFDYSDLALLLQIPTQNAQARQLLEKEFS 1120 1130 1140 1150 1160 1170 340 350 360 370 380 390 KIAA08 NLLALGTDRKLDDGDDKVFRRAPSWRKRFRPREHHGRGGMLSASAETLPAGFRVSTLGTL ::..:::::.::. . : : :.::::: :: .. .: . ::: :: .:: .. :.: KIAA06 NLISLGTDRRLDEDSAKSFSRSPSWRKMFREKDLRG---VTPDSAEMLPPNFRSAAAGAL 1180 1190 1200 1210 1220 1230 400 410 KIAA08 QPPPAPPKKIMPEAHSHYLYGHMLSAFRD : : .:..::... KIAA06 GSPGLPLRKLQPEGQTSGSSRADGVSVRTYSC 1240 1250 1260 >>KIAA1230 ( 932 res) fh06860s1 (932 aa) initn: 406 init1: 255 opt: 370 Z-score: 379.6 bits: 80.4 E(): 5e-16 Smith-Waterman score: 455; 31.511% identity (59.486% similar) in 311 aa overlap (24-333:530-795) 10 20 30 40 50 KIAA08 GRLIQLSRDGATGHVLLTDSEFSMQEPMVPAKLGTQAEKDRRLKKKHQLLEDA :.:: . ::.: :: ...: .. KIAA12 SPDSKKKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFK-RGGTRATAGPRLGWSRDLGQSN 500 510 520 530 540 550 60 70 80 90 100 110 KIAA08 RRKGMPFAQWDGPTVVSWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNA ::::.: : .:: . :. . :. . . . :: . :. ....:.::... KIAA12 SDLDMPFAKWTKEQVCNWL-MEQGLGS-YLNSGKHWIASGQTLLQASQQDLEKELGIKHS 560 570 580 590 600 610 120 130 140 150 160 170 KIAA08 LHRLKLRLAIQEMVSLTSPSAPPTSRTSSGNVWVTHEEMETLETSTKTDSEEGSWAQTLA ::: ::.::.: . : :: ::. KIAA12 LHRKKLQLALQALGS---------------------EE----ETN--------------- 620 630 180 190 200 210 220 230 KIAA08 YGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQ .: .. .:. ..:: ..:::::.. : : ::.::: ..: :: . ::.:. .:. :.. KIAA12 HGKLDFNWV-TRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDL-LSLKVVSVLHHLSIK 640 650 660 670 680 690 240 250 260 270 280 290 KIAA08 YGIMCLKRLNYDRKELEKR-REESQHEIKDVLVWTNDQVVHWVQSIGLRDYAGNLHESGV .:. :. :.. . :..: .:. ..: ::: .:..:..:. : .:: ::. ::: KIAA12 RAIQVLRINNFEPNCLRRRPSDENTIAPSEVQKWTNHRVMEWLRSVDLAEYAPNLRGSGV 700 710 720 730 740 750 300 310 320 330 340 350 KIAA08 HGALLALDENFDHNTLALILQIPTQNTQARQVMEREFNNLLALGTDRKLDDGDDKVFRRA ::.:..:. :. .:.: .:.:: ..: :. . .:: :. KIAA12 HGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVL 760 770 780 790 800 810 360 370 380 390 400 410 KIAA08 PSWRKRFRPREHHGRGGMLSASAETLPAGFRVSTLGTLQPPPAPPKKIMPEAHSHYLYGH KIAA12 LTATAKVKPKKLAFSNFGNLRKKKQEDGEEYVCPMELGQASGSASKKGFKPGLDMRLYEE 820 830 840 850 860 870 419 residues in 1 query sequences 1987086 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:34 2008 done: Thu Dec 18 15:20:35 2008 Total Scan time: 0.400 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]