hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16041208/chunk_1/iprscan-20080502-16041208.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0893 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 182.9 3.1e-50 7 SM00668 60.9 1.6e-13 1 SM00667 28.8 0.00075 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00667 1/1 65 97 .. 1 33 [] 28.8 0.00075 SM00668 1/1 100 157 .. 1 60 [] 60.9 1.6e-13 SM00320 1/7 651 689 .. 1 46 [] 23.4 0.032 SM00320 2/7 702 744 .. 1 46 [] 38.5 8.7e-07 SM00320 3/7 752 796 .. 1 46 [] 0.6 3.9e+02 SM00320 4/7 799 837 .. 1 46 [] 31.0 0.00017 SM00320 5/7 844 883 .. 1 46 [] 27.2 0.0023 SM00320 6/7 886 925 .. 1 46 [] 37.2 2.2e-06 SM00320 7/7 932 971 .. 1 46 [] 25.0 0.011 Alignments of top-scoring domains: SM00667: domain 1 of 1, from 65 to 97: score 28.8, E = 0.00075 *->rrselnrlileYLlenGyketaetlqkEtglsl<-* ++ e+++lil++L +++++ ++ +l+kE+g+ + KIAA0893 65 KEVEIIKLILDFLNSKKLHISMLALEKESGVIN 97 SM00668: domain 1 of 1, from 100 to 157: score 60.9, E = 1.6e-13 *->efkerkrirelilkGdwdeAlewlsslkpellednsAkeleFlLrkq + ++++++r+lil+G+wde+l++++ l++++++d++ + ++++kq KIAA0893 100 FSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKK--RFRYIILKQ 144 kfiELvrvgktee<-* kf+E ++v+++ + KIAA0893 145 KFLEALCVNNAMS 157 SM00320: domain 1 of 7, from 651 to 689: score 23.4, E = 0.032 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + ++ +l+ t+ +V++vaf+p g l a+gs+ +t+r+ KIAA0893 651 QfVCINILE-DTQ--AVRAVAFHPAG------GLYAVGSnSKTLRVC 688 d<-* KIAA0893 689 A 689 SM00320: domain 2 of 7, from 702 to 744: score 38.5, E = 8.7e-07 *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti +++++ +k+++ H+g ++++va+sp g +lla+gs+D+ + KIAA0893 702 PkQPVVRFKrnkHHKG--SIYCVAWSPCG------QLLATGSnDKYV 740 rlWd<-* ++ KIAA0893 741 KVLP 744 SM00320: domain 3 of 7, from 752 to 796: score 0.6, E = 3.9e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs..Dgtirl + + +++ H+g ++++af s ++ +l+s++ +D++i+ KIAA0893 752 AtGPDLEFSMHDG--TIRDLAFMEGPES--GGAILISAGagDCNIYT 794 Wd<-* d KIAA0893 795 TD 796 SM00320: domain 4 of 7, from 799 to 837: score 31.0, E = 0.00017 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ l+ l+gHtg ++++ + +g ++asgs+D+t+r+W KIAA0893 799 RgQGLHALSGHTG--HILAL-YTWSG------WMIASGSqDKTVRFW 836 d<-* d KIAA0893 837 D 837 SM00320: domain 5 of 7, from 844 to 883: score 27.2, E = 0.0023 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + t++g + +V sva++p+g +lla+g +D+++ l+ KIAA0893 844 VrVVGTTFHGTGS--AVASVAVDPSG------RLLATGQeDSSCMLY 882 d<-* d KIAA0893 883 D 883 SM00320: domain 6 of 7, from 886 to 925: score 37.2, E = 2.2e-06 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ +++++ H++ +V+sv+fsp ++l++gs D +i++ KIAA0893 886 GgRMVQSYHPHSS--DVRSVRFSPGA------HYLLTGSyDMKIKVT 924 d<-* d KIAA0893 925 D 925 SM00320: domain 7 of 7, from 932 to 971: score 25.0, E = 0.011 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ ++++ H++ V ++++ + ++s+s D+t+ lW KIAA0893 932 KqLPIMVVGEHKD--KVIQCRWHTQD------LSFLSSSaDRTVTLW 970 d<-* KIAA0893 971 T 971 //