hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16041208/chunk_1/iprscan-20080502-16041208.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0893 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 173.0 7e-49 7 PF00400.22.fs WD domain, G-beta repeat 161.2 2.5e-45 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/7 652 689 .. 1 38 [] 15.4 0.0023 PF00400.22.ls 2/7 706 744 .. 1 38 [] 30.7 4.7e-06 PF00400.22.fs 2/7 706 742 .. 1 36 [. 30.7 1.1e-07 PF00400.22.ls 4/7 800 837 .. 1 38 [] 30.6 5.2e-06 PF00400.22.fs 4/7 800 837 .. 1 38 [] 28.6 4.3e-07 PF00400.22.ls 5/7 845 883 .. 1 38 [] 25.3 0.0002 PF00400.22.fs 5/7 845 883 .. 1 38 [] 23.3 1.3e-05 PF00400.22.ls 6/7 887 925 .. 1 38 [] 35.3 2e-07 PF00400.22.fs 6/7 887 925 .. 1 38 [] 33.3 2.1e-08 PF00400.22.ls 7/7 933 971 .. 1 38 [] 23.8 0.00059 PF00400.22.fs 7/7 933 971 .. 1 38 [] 21.8 3.6e-05 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 7, from 652 to 689: score 15.4, E = 0.0023 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* c+++l++ +V++vaf+p g l a gS +t+++ KIAA0893 652 FVCInILeDT-QAVRAVAFHPA-GGLYAVGSNSKTLRVCA 689 PF00400.22.ls: domain 2 of 7, from 706 to 744: score 30.7, E = 4.7e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++H+++++cva+sp g+lla+gS D+ +k+ KIAA0893 706 VVRFkRNkHHKGSIYCVAWSPC-GQLLATGSNDKYVKVLP 744 PF00400.22.fs: domain 2 of 7, from 706 to 742: score 30.7, E = 1.1e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtiki<-* + ++H+++++cva+sp g+lla+gS D+ +k+ KIAA0893 706 VVRFkRNkHHKGSIYCVAWSPC-GQLLATGSNDKYVKV 742 PF00400.22.ls: domain 4 of 7, from 800 to 837: score 30.6, E = 5.2e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ ++ l+gHt+ + ++ ++asgS D+t++ Wd KIAA0893 800 GQGLhALsGHTGHILALYTWSG--WMIASGSQDKTVRFWD 837 PF00400.22.fs: domain 4 of 7, from 800 to 837: score 28.6, E = 4.3e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ ++ l+gHt+ + ++ ++asgS D+t++ Wd KIAA0893 800 GQGLhALsGHTGHILALYTWSG--WMIASGSQDKTVRFWD 837 PF00400.22.ls: domain 5 of 7, from 845 to 883: score 25.3, E = 0.0002 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + ++++g s+V +va++p+ g+lla+g +D ++ ++d KIAA0893 845 RVVGtTFhGTGSAVASVAVDPS-GRLLATGQEDSSCMLYD 883 PF00400.22.fs: domain 5 of 7, from 845 to 883: score 23.3, E = 1.3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + ++++g s+V +va++p+ g+lla+g +D ++ ++d KIAA0893 845 RVVGtTFhGTGSAVASVAVDPS-GRLLATGQEDSSCMLYD 883 PF00400.22.ls: domain 6 of 7, from 887 to 925: score 35.3, E = 2e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g +++++ H+s V++v+fsp ++l++gS D +ik+ d KIAA0893 887 GRMVqSYhPHSSDVRSVRFSPG-AHYLLTGSYDMKIKVTD 925 PF00400.22.fs: domain 6 of 7, from 887 to 925: score 33.3, E = 2.1e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g +++++ H+s V++v+fsp ++l++gS D +ik+ d KIAA0893 887 GRMVqSYhPHSSDVRSVRFSPG-AHYLLTGSYDMKIKVTD 925 PF00400.22.ls: domain 7 of 7, from 933 to 971: score 23.8, E = 0.00059 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ v + H++ V ++++ ++s+S+D+t+ +W KIAA0893 933 QLPImVVgEHKDKVIQCRWHTQ-DLSFLSSSADRTVTLWT 971 PF00400.22.fs: domain 7 of 7, from 933 to 971: score 21.8, E = 3.6e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ v + H++ V ++++ ++s+S+D+t+ +W KIAA0893 933 QLPImVVgEHKDKVIQCRWHTQ-DLSFLSSSADRTVTLWT 971 //