hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15590967/chunk_1/iprscan-20080502-15590967.nocrc
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Query sequence: KIAA0890
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 113.5    2.4e-29   1
SM00490                                                  76.3    3.8e-18   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     448   637 ..     1   219 []   113.5  2.4e-29
SM00490      1/1     698   803 ..     1    86 []    76.3  3.8e-18

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 448 to 637: score 113.5, E = 2.4e-29
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         +  p+   +++++ ++ +v++ ++TG+GKT+ +++ lle+   +
    KIAA0890   448    PQlPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTE 494  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   +     +g ++ v++++P+r+ a  +a++++ +++++        ++vg+
    KIAA0890   495 G-----RGARCNVIITQPRRISAVSVAQRVSHELGPSL------RRNVGF 533  

                   ygGsktkekeqlrklksgkt....dilvtTpgrLldll.ngkglsl.nld
                     +           l+s+++++++ +l++T g+Ll+ l++++  sl+ ++
    KIAA0890   534 QVR-----------LESKPPsrggALLFCTVGILLRKLqSNP--SLeGVS 570  

                   lvilDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppe
                   +vi+DE+H+++         ++d l+ llk l++ +++++++l+SAT  +
    KIAA0890   571 HVIVDEVHERD--------VNTDFLLiLLKGLqrlNPALRLVLMSATG-D 611  

                   ienllklflnlpelfpnpvfisvgftlepieqf<-*
                    e+++++f+        pv  ++gf   p++++   
    KIAA0890   612 NERFSRYFGG------CPVIKVPGF-MYPVKEH    637  

SM00490: domain 1 of 1, from 698 to 803: score 76.3, E = 3.8e-18
                   *->delaelLkellkd..pgikvarlHGglsqeeReeilekFrkgkikvL
                      + + ++L+e+l+++++++ ++++H++++  ++++i+++ + g +k++
    KIAA0890   698    KGVQQRLQEALGMheSKYLILPVHSNIPMMDQKAIFQQPPVGVRKIV 744  

                   vaTdvaerGlDipgvdlVInydl..................pwspasyiQ
                   +aT++ae++++i ++ +V++ +l+++++ + +++ +  ++ + s a+ iQ
    KIAA0890   745 LATNIAETSITINDIVHVVDSGLhkeerydlktkvscletvWVSRANVIQ 794  

                   RiGRaGRaG<-*
                   R+GRaGR     
    KIAA0890   795 RRGRAGRCQ    803  

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