hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15590967/chunk_1/iprscan-20080502-15590967.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0890 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07717.6.fs Domain of unknown function (DUF1605) 82.2 4.1e-23 1 PF07717.6.ls Domain of unknown function (DUF1605) 84.0 4.4e-22 1 PF04408.13.ls Helicase associated domain (HA2) 80.8 3.9e-21 1 PF04408.13.fs Helicase associated domain (HA2) 80.2 6.1e-21 2 PF00271.21.fs Helicase conserved C-terminal domain 64.1 4e-18 1 PF00271.21.ls Helicase conserved C-terminal domain 66.2 1e-16 1 PF00035.15.ls Double-stranded RNA binding motif 48.3 2.5e-11 2 PF00035.15.fs Double-stranded RNA binding motif 37.0 1.1e-09 2 PF00270.19.ls DEAD/DEAH box helicase 16.8 2e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00035.15.fs 1/2 69 137 .. 1 67 [] 28.3 3e-07 PF00035.15.ls 1/2 69 137 .. 1 67 [] 30.3 6.2e-06 PF00270.19.ls 1/1 453 616 .. 1 213 [] 16.8 2e-07 PF00271.21.fs 1/1 709 803 .. 1 76 [] 64.1 4e-18 PF00271.21.ls 1/1 709 803 .. 1 76 [] 66.2 1e-16 PF04408.13.ls 1/1 866 956 .. 1 124 [] 80.8 3.9e-21 PF04408.13.fs 2/2 866 956 .. 1 124 [] 79.1 1.3e-20 PF07717.6.fs 1/1 996 1123 .. 1 139 [] 82.2 4.1e-23 PF07717.6.ls 1/1 996 1123 .. 1 139 [] 84.0 4.4e-22 Alignments of top-scoring domains: PF00035.15.fs: domain 1 of 2, from 69 to 137: score 28.3, E = 3e-07 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtv...ngke pk+lL+ + + ++ + +++++p++ +vt+ ++ ++ +e KIAA0890 69 PKNLLNS-VIGRALGISHAKDKLVyVHTNGPKKKKVTLHIkwpKSVE 114 ygtGkgssKKeAkqlAAekALrkL<-* + +G gs K +A+++AA++A++ KIAA0890 115 V-EGYGSKKIDAERQAAAAACQLF 137 PF00035.15.ls: domain 1 of 2, from 69 to 137: score 30.3, E = 6.2e-06 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtv...ngke pk+lL+ + + ++ + +++++p++ +vt+ ++ ++ +e KIAA0890 69 PKNLLNS-VIGRALGISHAKDKLVyVHTNGPKKKKVTLHIkwpKSVE 114 ygtGkgssKKeAkqlAAekALrkL<-* + +G gs K +A+++AA++A++ KIAA0890 115 V-EGYGSKKIDAERQAAAAACQLF 137 PF00270.19.ls: domain 1 of 1, from 453 to 616: score 16.8, E = 2e-07 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq p+ ++ai ++ v+++++TG GKT +l++ + KIAA0890 453 DPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTeG---- 495 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx eskplkkkkdgpqalvlaPTreLaeQiyeel.kklgkgiqpdleellglk +++ +++ P r a ++++++ +lg l + KIAA0890 496 -------RGARCNVIITQPRRISAVSVAQRVsHELGPS--------LRRN 530 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkre +G + + e + +g +l++T g Ll l + + KIAA0890 531 ----VGFQVRLESKPPS-----RG----GALLFCTVGILLRKL---QSN- 563 RF xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx gasldlknlkllVlDEAhrlldm.kGfgedleeilrrlprpklrrlsqdl + l+ ++ +++DE+h+ d + f l + l rl+ p KIAA0890 564 PS---LEGVSHVIVDEVHE-RDVnTDFLLILLKGLQRLN-PA-------- 600 RF xxxxxxxxxxxxxxxxxxx pnrqtllfSATlprnvedl<-* + +l+SAT + n + KIAA0890 601 --LRLVLMSATGD-NERFS 616 PF00271.21.fs: domain 1 of 1, from 709 to 803: score 64.1, E = 4e-18 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD ++e ++ ++++h++++ ++++i+++ g +k+++aT++a+++i+ KIAA0890 709 GMhESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSIT 755 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i d+ +V++ +l+++++ + +++ + ++ + ++++ iQR+GRaGR KIAA0890 756 INDIVHVVDSGLhkeerydlktkvscletvWVSRANVIQRRGRAGRCQ 803 * KIAA0890 - - PF00271.21.ls: domain 1 of 1, from 709 to 803: score 66.2, E = 1e-16 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD ++e ++ ++++h++++ ++++i+++ g +k+++aT++a+++i+ KIAA0890 709 GMhESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSIT 755 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i d+ +V++ +l+++++ + +++ + ++ + ++++ iQR+GRaGR KIAA0890 756 INDIVHVVDSGLhkeerydlktkvscletvWVSRANVIQRRGRAGRCQ 803 * KIAA0890 - - PF04408.13.ls: domain 1 of 1, from 866 to 956: score 80.8, E = 3.9e-21 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf +A lL+e+g+l D+ + LT lG+++a++ +dPrL+k++ +laa+f KIAA0890 866 EAVILLQEIGVL-DQREYLT-TLGQRLAHISTDPRLAKAI-VLAAIF 909 gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla +cl++ l+++++L+ ++pf + +l + +a+ +d + KIAA0890 910 RCLHPLLVVVSCLT--RDPFSS----------SL--QNRAE-----VDKV 940 rakfegrsllksarsrlts.lsDhlall<-* +a + + + sDhla++ KIAA0890 941 KALL------------SHDsGSDHLAFV 956 PF04408.13.fs: domain 2 of 2, from 866 to 956: score 79.1, E = 1.3e-20 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf +A lL+e+g+l D+ + LT lG+++a++ +dPrL+k++ +laa+f KIAA0890 866 EAVILLQEIGVL-DQREYLT-TLGQRLAHISTDPRLAKAI-VLAAIF 909 gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla +cl++ l+++++L+ ++pf + +l + +a+ +d + KIAA0890 910 RCLHPLLVVVSCLT--RDPFSS----------SL--QNRAE-----VDKV 940 rakfegrsllksarsrlts.lsDhlall<-* +a + + + sDhla++ KIAA0890 941 KALL------------SHDsGSDHLAFV 956 PF07717.6.fs: domain 1 of 1, from 996 to 1123: score 82.2, E = 4.1e-23 *->sQLlrilkrlgli............lnessgdiellrkallaGlypn +Q+++ +++++l++++++ + + ++ne s+++el++ +l+aGlypn KIAA0890 996 KQFSENIYEAFLVgkpsdctlasaqCNEYSEEEELVKGVLMAGLYPN 1042 vArreedrggkgsYktlrsvrlpv.rs.k....rsg.v.kdgeekgkfkt + ++ r+gk v+r++k ++++++ ++k KIAA0890 1043 LIQV---RQGK------------VtRQgKfkpnSVTyRtK---------- 1067 ndgnVfiHPsSvLfntkkkppkwivytelvetskkgdgskvyardvtais +gn+++H s +++++++ +++w++y v++ +gs v++rd + + KIAA0890 1068 -SGNILLHKSTINREATRLRSRWLTYFMAVKS----NGS-VFVRDSSQVH 1111 pewllllapgki<-* p ++lll +g++ KIAA0890 1112 PLAVLLLTDGDV 1123 PF07717.6.ls: domain 1 of 1, from 996 to 1123: score 84.0, E = 4.4e-22 *->sQLlrilkrlgli............lnessgdiellrkallaGlypn +Q+++ +++++l++++++ + + ++ne s+++el++ +l+aGlypn KIAA0890 996 KQFSENIYEAFLVgkpsdctlasaqCNEYSEEEELVKGVLMAGLYPN 1042 vArreedrggkgsYktlrsvrlpv.rs.k....rsg.v.kdgeekgkfkt + ++ r+gk v+r++k ++++++ ++k KIAA0890 1043 LIQV---RQGK------------VtRQgKfkpnSVTyRtK---------- 1067 ndgnVfiHPsSvLfntkkkppkwivytelvetskkgdgskvyardvtais +gn+++H s +++++++ +++w++y v++ +gs v++rd + + KIAA0890 1068 -SGNILLHKSTINREATRLRSRWLTYFMAVKS----NGS-VFVRDSSQVH 1111 pewllllapgki<-* p ++lll +g++ KIAA0890 1112 PLAVLLLTDGDV 1123 //