# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk08008.fasta.huge -Q ../query/KIAA0889.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0889, 535 aa
 vs ./tmplib.23663 library

1986970 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.6505+/-0.00569; mu= 12.9168+/- 0.386
 mean_var=131.4742+/-31.197, 0's: 0 Z-trim: 4  B-trim: 13 in 1/39
 Lambda= 0.111855

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0802  ( 1578 res)   hh07536                    (1578)  466 86.9 1.2e-17


>>KIAA0802  ( 1578 res)   hh07536                         (1578 aa)
 initn: 827 init1: 362 opt: 466  Z-score: 408.9  bits: 86.9 E(): 1.2e-17
Smith-Waterman score: 804;  35.503% identity (58.777% similar) in 507 aa overlap (49-519:1076-1566)

       20        30        40        50        60        70        
KIAA08 WDWAPTTSLQEVNKTVLVFALTQHTDQGGRPECALSVISTNNDVSSSVLRRTKSVSSMSE
                                     :: .:   :...::.  .     ... . :
KIAA08 EENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPL--SPDDLKYIEE
        1050      1060      1070      1080      1090        1100   

       80           90        100       110       120       130    
KIAA08 FESLLDCSP---YLAGG-DARGKKLPNNPAFGFVSSEPGDPEKDTKEKPGLSSRDCNHLG
       :..  : .:   . .:: :  . .   . :    :.::  :...     ...    .  .
KIAA08 FNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPF-PDSSWYLTTSVTMTTDTMTS
          1110      1120      1130      1140       1150      1160  

          140       150       160       170       180       190    
KIAA08 ALACQDPPGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKIIIEPGFLFTTAK
          ::  :     ::..  ...:.:: .:::..::.   ..   ::     : :  . :.
KIAA08 PEHCQKQP----LRSHVLTEQSGLRVLHSPPAVRRVDSITAAGGEG-----P-FPTSRAR
           1170          1180      1190      1200            1210  

          200       210          220         230       240         
KIAA08 PKESAEADGLAESSYGRWLCN---FSRQRLDGGSA--GSPSAAGPGFPAALHDFEMSGNM
        . .    :  :   .:: :.    ::. ..:.     ::  .. :: . ::..::: :.
KIAA08 GSPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASPLHSLEMSKNL
           1220      1230      1240      1250      1260      1270  

     250       260       270       280       290       300         
KIAA08 SDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPR-----
       ::::::..  ::.:. ::  : .::. . :: :  ..::::..:.::::::.  :     
KIAA08 SDDMKEVAFSVRNAICSGPGELQVKDMACQTNGSRTMGTQTVQTISVGLQTEALRGSGVT
           1280      1290      1300      1310      1320      1330  

                 310       320       330       340       350       
KIAA08 SSLH-------GKAWSPRSSSLVSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSV
       :: :       : . .: ::   :.::.:.. ...::....:: :::::::::::::. .
KIAA08 SSPHKCLTPKAGGGATPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPL
           1340      1350      1360      1370      1380      1390  

       360       370       380       390       400       410       
KIAA08 SKLDSSKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVW
        : :. ..:.  .. :   . ::::::::::.:::  .:::::::::....::  ... .
KIAA08 PKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVVQDPF
           1400      1410      1420      1430      1440      1450  

       420          430       440       450              460       
KIAA08 KLGM---SETRAKPEPPKYGIVQEFFRNVCGRAPSPTSSAGE-------EGTKKPEPLS-
       . :.   :..:.    :. :  ::   :  ::.::: . ..:       :::   . :: 
KIAA08 QKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSA
           1460      1470      1480      1490      1500      1510  

        470       480       490       500           510       520  
KIAA08 PASYHQPEGVARILNKKAAKLGSSEEVRLTMLPQVGKDGVLRD----GDGAVVLPNEVGG
       : .:   :.::::::::  . . .:: : .     :  :.  :    :: :   : :   
KIAA08 PPGYTLTENVARILNKKLLEHALKEERRQAAH---GPPGLHSDSHSLGDTAEPGPMENQT
           1520      1530      1540         1550      1560         

            530     
KIAA08 WDLSFLLVGGVSI
                    
KIAA08 VLLTAPWGL    
    1570            




535 residues in 1 query   sequences
1986970 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:13 2008 done: Thu Dec 18 15:20:14 2008
 Total Scan time:  0.480 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]