hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15540628/chunk_1/iprscan-20080502-15540628.nocrc
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Query sequence: KIAA0887
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00594                                                 216.0    3.4e-60   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00594    1/1     136   261 ..     1   158 []   216.0  3.4e-60

Alignments of top-scoring domains:
SM00594: domain 1 of 1, from 136 to 261: score 216.0, E = 3.4e-60
                   *->sfvalyrprygsryQitefhplfyqGsleaAlqeAkrreakerrllv
                      sf+++++++yg+      +hp+fyqG++ +Al++Akr    e+r+l+
    KIAA0887   136    SFMHSFEEKYGR------AHPVFYQGTYSQALNDAKR----ELRFLL 172  

                   lYlhsddsenfdsevFcrdvLcneaVislIrernfilWgvDvttdEGlrv
                   +Ylh dd++  ds+ Fcr++Lc+++VislI++ ++++W+++++++EG+rv
    KIAA0887   173 VYLHGDDHQ--DSDEFCRNTLCAPEVISLINT-RMLFWACSTNKPEGYRV 219  

                   slslktaanmSdvrltiresKiesfPlvaiVmdkrtgqkrievvgrveGn
                   s++l+                 +++P++a++m+k+   +r++vvgr+eG 
    KIAA0887   220 SQALR----------------ENTYPFLAMIMLKD---RRMTVVGRLEGL 250  

                   ispeelitrLe<-*
                   i+p++li++L+   
    KIAA0887   251 IQPDDLINQLT    261  

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