hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15540628/chunk_1/iprscan-20080502-15540628.nocrc
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Query sequence: KIAA0887
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00627.21.fs UBA/TS-N domain                                 20.9    3.4e-05   1
PF00789.11.fs UBX domain                                      17.9    0.00021   2
PF00789.11.ls UBX domain                                      18.4     0.0013   1
PF00627.21.ls UBA/TS-N domain                                 20.8     0.0046   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00627.21.fs   1/1      10    46 ..     1    36 [.    20.9  3.4e-05
PF00627.21.ls   1/1      10    51 ..     1    41 []    20.8   0.0046
PF00789.11.ls   1/1     354   439 ..     1    92 []    18.4   0.0013

Alignments of top-scoring domains:
PF00627.21.fs: domain 1 of 1, from 10 to 46: score 20.9, E = 3.4e-05
                   *->ideeavkqLreMTGf.dreeakkALeatngnverAve<-*
                      ++ e++ q +++TG +++++++  Le++n+n+e+Av+   
    KIAA0887    10    EQTEKLLQFQDLTGIeSMDQCRHTLEQHNWNIEAAVQ    46   

PF00627.21.ls: domain 1 of 1, from 10 to 51: score 20.8, E = 0.0046
                   *->ideeavkqLreMTGf.dreeakkALeatngnverAvewLleh<-*
                      ++ e++ q +++TG +++++++  Le++n+n+e+Av+  l++   
    KIAA0887    10    EQTEKLLQFQDLTGIeSMDQCRHTLEQHNWNIEAAVQDRLNE    51   

PF00789.11.ls: domain 1 of 1, from 354 to 439: score 18.4, E = 0.0013
                   *->skaedvcrlqiRlPDGsrlvrrFnssdklqdvydfVdsnrddadepe
                       ++++ +++ ++lP+ sr +rrF  s +l  + df++s  +  ++  
    KIAA0887   354    PDDPESVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEK-- 398  

                   VyPdYHdyeFsLltnfPRrlltdddesk.....tLkeagllpnstlvlep
                            F++  nfPRr+l +   +  ++++tL+eagl   ++l+++ 
    KIAA0887   399 ---------FQIEANFPRRVLPCIPSEEwpnppTLQEAGLSHTEVLFVQD 439  

                   <-*
                      
    KIAA0887     -     -    

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