hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15435171/chunk_1/iprscan-20080502-15435171.nocrc
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Query sequence: KIAA0881
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 301.0    8.8e-86   1
SM00219                                                 100.0    2.7e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      43   295 ..     1   280 []   100.0  2.7e-25
SM00220    1/1      43   296 ..     1   231 []   301.0  8.8e-86

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 43 to 295: score 100.0, E = 2.7e-25
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.......keeF
                       + ++++G+G FG Vy ++  ++++ VA+K++  +++++++++ +++
    KIAA0881    43    FSDLREIGHGSFGAVYFARDVrnsEVVAIKKMS-YSgkqsnekWQDI 88   

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   ++E + + kl  +HpN ++  G+ + e       +  ++vmEy+ +G+  
    KIAA0881    89 IKEVRFLQKL--RHPNTIQYRGCYLRE-------HTAWLVMEYC-LGSAS 128  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   d L  +++ l+  +     + + +G +YL+s+n +HRD  A N+L++e++
    KIAA0881   129 DLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG 178  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl..
                    vK +DFG +                +     g+       WmAPE++  
    KIAA0881   179 LVKLGDFGSASIMAPA-------NSFV-----GTP-----YWMAPEVIla 211  

                   .kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkG
                    ++g +  k DVWS G+++ E+  + ++P  +     m++  +l ++ + 
    KIAA0881   212 mDEGQYDGKVDVWSLGITCIELAER-KPPLFN-----MNAMSALYHIAQN 255  

                   yRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-*
                   + +            + ++   +   +C +  P dRPt + l ++r+   
    KIAA0881   256 ESPVLQSG-------HWSEYFRNFVDSCLQKIPQDRPTSEVLlKHRF    295  

SM00220: domain 1 of 1, from 43 to 296: score 301.0, E = 8.8e-86
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      +  l+++G+G+FG Vy ard++  ++vAiK+++ ++++++++ ++i+
    KIAA0881    43    FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSysgkqsnekwQDII 89   

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                   +E++ L+k +HPN +++ +++  ++  +lVmEyc G   +  dll+ +++
    KIAA0881    90 KEVRFLQKlRHPNTIQYRGCYLReHTAWLVMEYCLG---SASDLLEVHKK 136  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                   +     l E e++ +++  l++L+YLHs++ iHRD+K  NiLL++++ vK
    KIAA0881   137 P-----LQEvEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEpgLVK 181  

                   laDFGlArql...ttfvGTpeYmAPEvl......gYgkpavDiWSlGcil
                   l+DFG+A ++ + ++fvGTp++mAPEv+   ++++Y++ +vD+WSlG++ 
    KIAA0881   182 LGDFGSASIMapaNSFVGTPYWMAPEVIlamdegQYDG-KVDVWSLGITC 230  

                   yElltGkpPFp...qldlifkkig...........SpeakdLikklLvkd
                   +El+ +kpP  + + + +++++  ++++   ++++S+ ++++++ +L+k 
    KIAA0881   231 IELAERKPPLFnmnAMSALYHIAQnespvlqsghwSEYFRNFVDSCLQKI 280  

                   PekRlta.eaLedeldikaHPff<-*
                   P++R+t + +L+       H f+   
    KIAA0881   281 PQDRPTSeVLLK-------HRFV    296  

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