hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15420915/chunk_1/iprscan-20080502-15420915.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0880 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03137.10.ls Organic Anion Transporter Polypeptide (OATP) 996.5 8.9e-297 1 PF03137.10.fs Organic Anion Transporter Polypeptide (OATP) 994.6 3.2e-296 1 PF07690.6.fs Major Facilitator Superfamily 74.0 1.2e-20 2 PF07690.6.ls Major Facilitator Superfamily 57.1 5.4e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03137.10.fs 1/1 66 666 .. 1 591 [] 994.6 3.2e-296 PF03137.10.ls 1/1 66 666 .. 1 591 [] 996.5 8.9e-297 PF07690.6.fs 1/2 69 269 .. 1 165 [. 34.0 2e-09 PF07690.6.ls 1/1 69 641 .. 1 397 [] 57.1 5.4e-14 PF07690.6.fs 2/2 290 491 .. 172 341 .. 40.0 4.2e-11 Alignments of top-scoring domains: PF03137.10.fs: domain 1 of 1, from 66 to 666: score 994.6, E = 3.2e-296 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ikvFllllglaallQGllvngyfkSsITTIEkRFkisSsqsGlIass ik+F+l+++l++l+Q l+++gy+kSsI+T+EkRF++sS++sGl+as+ KIAA0880 66 IKLFVLCHSLLQLAQ-LMISGYLKSSISTVEKRFGLSSQTSGLLASF 111 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ydIGnllliifVSYFGsrgHRPRwIGiGlllmalGslltaLPHFlyGpGe +++Gn++li+fVSYFGsr+HRPR+IG+G +l+al++ll++LPHF+++p KIAA0880 112 NEVGNTALIVFVSYFGSRVHRPRMIGYGAILVALAGLLMTLPHFISEP-- 159 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dalsLteefYsyestnltasnessnstlcilggiqthssaeiaspeqseg Y+y++t++++++++++++lc ++t+s++++a+++++++ KIAA0880 160 ---------YRYDNTSPEDMPQDFKASLC----LPTTSAPASAPSNGNCS 196 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx adhkegtslmwlllfvaQllrGIGaTPiytlGiSYiDDnvkskkSPlYLg +++++++ ++++++fvaQ+l+G+G++Pi+++GiSYiDD++++++SPlYLg KIAA0880 197 SYTETQHLSVVGIMFVAQTLLGVGGVPIQPFGISYIDDFAHNSNSPLYLG 246 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ilftlamfGPAiGFllgSfcLrlYvDfgrvptedvsitptDPRWvGAWWL ilf+++m+GP ++F lgS++LrlYvD++++p++++s+t +DPRWvGAWWL KIAA0880 247 ILFAVTMMGPGLAFGLGSLMLRLYVDINQMPEGGISLTIKDPRWVGAWWL 296 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GFLvcggllllsaiPfffFPKeLPkaskRrleeeqgrkesrdlearkakd GFL+++g++ l+aiP+ffFPKe+Pk+ kR+l++++++++++d++ark+kd KIAA0880 297 GFLIAAGAVALAAIPYFFFPKEMPKE-KRELQFRRKVLAVTDSPARKGKD 345 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ekrkqaeepksgkidargrialwykaprflkdFpkvlkrlltNpvfmlvv +++kq +++ ++k+d++++ia+++++++f+k+Fp+vl+++l++p+f+lvv KIAA0880 346 SPSKQSPGESTKKQDGLVQIAPNLTVIQFIKVFPRVLLQTLRHPIFLLVV 395 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx laqvlessviaGystFlPKyLEtQyglsaSkAnlLtGvvalPaaavGill l+qv+ ss+ aG++tFlPK+LE+Q++++aS+AnlL+G++++P ++vGi++ KIAA0880 396 LSQVCLSSMAAGMATFLPKFLERQFSITASYANLLIGCLSFPSVIVGIVV 445 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GGliikkfklsargmakfaivvilvslagylplffigCssspvaGvtvsy GG+++k+++l ++g+ +++++ +l++l+++lplffigCss+++aG+t+++ KIAA0880 446 GGVLVKRLHLGPVGCGALCLLGMLLCLFFSLPLFFIGCSSHQIAGITHQT 495 RF xxxxxxxxxxxxxxxxxxx egnstsdshhleplssCna............................... s ++ le+++sC++ ++++ ++ ++ ++++++ + ++++ ++++ KIAA0880 496 -----SAHPGLELSPSCMEacscpldgfnpvcdpstrveyitpchagcss 540 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ....................ipsnsassativkiklasdvlndkGyCpsd + +++ +++++ +++n++ +G+C+s+ KIAA0880 541 wvvqdaldnsqvfytncscvVEGNPVL----------------AGSCDST 574 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx pkCckqfliFLilmcilsFigalsaipllmlvLRcVppeeKslAlGvqsl C++ +++FL+l++++s +++l+++p++ml+LR V++e+K+lA+G+q++ KIAA0880 575 --CSHLVVPFLLLVSLGSALACLTHTPSFMLILRGVKKEDKTLAVGIQFM 622 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx liRlLGfIPaPIiFGalIDstCLvWgktCcGkrGaCrlYDndslr<-* ++R+L+++P+P+i+G ID+tC++W +C G+r++Cr+Y+nd+lr KIAA0880 623 FLRILAWMPSPVIHGSAIDTTCVHWALSC-GRRAVCRYYNNDLLR 666 PF03137.10.ls: domain 1 of 1, from 66 to 666: score 996.5, E = 8.9e-297 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ikvFllllglaallQGllvngyfkSsITTIEkRFkisSsqsGlIass ik+F+l+++l++l+Q l+++gy+kSsI+T+EkRF++sS++sGl+as+ KIAA0880 66 IKLFVLCHSLLQLAQ-LMISGYLKSSISTVEKRFGLSSQTSGLLASF 111 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ydIGnllliifVSYFGsrgHRPRwIGiGlllmalGslltaLPHFlyGpGe +++Gn++li+fVSYFGsr+HRPR+IG+G +l+al++ll++LPHF+++p KIAA0880 112 NEVGNTALIVFVSYFGSRVHRPRMIGYGAILVALAGLLMTLPHFISEP-- 159 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dalsLteefYsyestnltasnessnstlcilggiqthssaeiaspeqseg Y+y++t++++++++++++lc ++t+s++++a+++++++ KIAA0880 160 ---------YRYDNTSPEDMPQDFKASLC----LPTTSAPASAPSNGNCS 196 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx adhkegtslmwlllfvaQllrGIGaTPiytlGiSYiDDnvkskkSPlYLg +++++++ ++++++fvaQ+l+G+G++Pi+++GiSYiDD++++++SPlYLg KIAA0880 197 SYTETQHLSVVGIMFVAQTLLGVGGVPIQPFGISYIDDFAHNSNSPLYLG 246 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ilftlamfGPAiGFllgSfcLrlYvDfgrvptedvsitptDPRWvGAWWL ilf+++m+GP ++F lgS++LrlYvD++++p++++s+t +DPRWvGAWWL KIAA0880 247 ILFAVTMMGPGLAFGLGSLMLRLYVDINQMPEGGISLTIKDPRWVGAWWL 296 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GFLvcggllllsaiPfffFPKeLPkaskRrleeeqgrkesrdlearkakd GFL+++g++ l+aiP+ffFPKe+Pk+ kR+l++++++++++d++ark+kd KIAA0880 297 GFLIAAGAVALAAIPYFFFPKEMPKE-KRELQFRRKVLAVTDSPARKGKD 345 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ekrkqaeepksgkidargrialwykaprflkdFpkvlkrlltNpvfmlvv +++kq +++ ++k+d++++ia+++++++f+k+Fp+vl+++l++p+f+lvv KIAA0880 346 SPSKQSPGESTKKQDGLVQIAPNLTVIQFIKVFPRVLLQTLRHPIFLLVV 395 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx laqvlessviaGystFlPKyLEtQyglsaSkAnlLtGvvalPaaavGill l+qv+ ss+ aG++tFlPK+LE+Q++++aS+AnlL+G++++P ++vGi++ KIAA0880 396 LSQVCLSSMAAGMATFLPKFLERQFSITASYANLLIGCLSFPSVIVGIVV 445 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GGliikkfklsargmakfaivvilvslagylplffigCssspvaGvtvsy GG+++k+++l ++g+ +++++ +l++l+++lplffigCss+++aG+t+++ KIAA0880 446 GGVLVKRLHLGPVGCGALCLLGMLLCLFFSLPLFFIGCSSHQIAGITHQT 495 RF xxxxxxxxxxxxxxxxxxx egnstsdshhleplssCna............................... s ++ le+++sC++ ++++ ++ ++ ++++++ + ++++ ++++ KIAA0880 496 -----SAHPGLELSPSCMEacscpldgfnpvcdpstrveyitpchagcss 540 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ....................ipsnsassativkiklasdvlndkGyCpsd + +++ +++++ +++n++ +G+C+s+ KIAA0880 541 wvvqdaldnsqvfytncscvVEGNPVL----------------AGSCDST 574 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx pkCckqfliFLilmcilsFigalsaipllmlvLRcVppeeKslAlGvqsl C++ +++FL+l++++s +++l+++p++ml+LR V++e+K+lA+G+q++ KIAA0880 575 --CSHLVVPFLLLVSLGSALACLTHTPSFMLILRGVKKEDKTLAVGIQFM 622 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx liRlLGfIPaPIiFGalIDstCLvWgktCcGkrGaCrlYDndslr<-* ++R+L+++P+P+i+G ID+tC++W +C G+r++Cr+Y+nd+lr KIAA0880 623 FLRILAWMPSPVIHGSAIDTTCVHWALSC-GRRAVCRYYNNDLLR 666 PF07690.6.fs: domain 1 of 2, from 69 to 269: score 34.0, E = 2e-09 *->lflaaflaglgrsllgpalp.ylasslee.sslgqtdllspteigll ++l++ l l+ ++++ l + ++ + + ++g ls+ + gll KIAA0880 69 FVLCHSLLQLAQLMISGYLKsSIS---TVeKRFG----LSSQTSGLL 108 ltafalgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllaf ++ +g ++ +++++++ r+ r r ++ g++l+al+ ll+ + KIAA0880 109 ASFNEVGNTALIVFVSYFGSRVHRP---R---MIGYGAILVALAGLLMTL 152 assts............................................. +++s++ + +++++++ +++ + + ++++ + + +++++ ++ ++++ KIAA0880 153 PHFISepyrydntspedmpqdfkaslclpttsapasapsngncssytetq 202 ....lwllliarallqGlgagllapaaaaliadwfppeergralgivsag + + + +++a l +G+g+ + p ++++i d + ++ +++lgi++a KIAA0880 203 hlsvVGIMFVAQTL-LGVGGVPIQPFGISYIDDFAHNSNSPLYLGILFAV 251 fglGaalggpllggllaal<-* + +G+ ++ lg+l+ +l KIAA0880 252 TMMGPG-LAFGLGSLMLRL 269 PF07690.6.ls: domain 1 of 1, from 69 to 641: score 57.1, E = 5.4e-14 *->lflaaflaglgrsllgpalp.ylasslee.sslgqtdllspteigll ++l++ l l+ ++++ l + ++ + + ++g ls+ + gll KIAA0880 69 FVLCHSLLQLAQLMISGYLKsSIS---TVeKRFG----LSSQTSGLL 108 ltafalgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllaf ++ +g ++ +++++++ r+ r r ++ g++l+al+ ll+ + KIAA0880 109 ASFNEVGNTALIVFVSYFGSRVHRP---R---MIGYGAILVALAGLLMTL 152 assts............................................. +++s++ + +++++++ +++ + + ++++ + + +++++ ++ ++++ KIAA0880 153 PHFISepyrydntspedmpqdfkaslclpttsapasapsngncssytetq 202 ....lwllliarallqGlgagllapaaaaliadwfppeergralgivsag + + + +++a l +G+g+ + p ++++i d + ++ +++lgi++a KIAA0880 203 hlsvVGIMFVAQTL-LGVGGVPIQPFGISYIDDFAHNSNSPLYLGILFAV 251 fglGaalgg...............pllggllaalgwwwssgt.fWraaFl + +G+ l+ + ++ + + ++ + gg+ ++ +++ W Fl KIAA0880 252 TMMGPGLAFglgslmlrlyvdinqMPEGGISLTIKD--PRWVgAWWLGFL 299 ilgilallaallllvlfllpeppakasgkpeeeeagi............. i++++ +laa++ +f+++e+p+++++ ++ ++ ++++ +++++++ KIAA0880 300 IAAGAVALAAIP--YFFFPKEMPKEKRELQFRRKVLAvtdsparkgkdsp 347 ...........................alr.lll.p.lllillalfllla ++++++++++++++ + ++ + + + + ++ l+ +++l+++l KIAA0880 348 skqspgestkkqdglvqiapnltviqfIKVfPRVlLqTLRHPIFLLVVLS 397 aflalltflplylllpllls.saglslsalaagllllalglggllgglll + ++ +++ ++lp +l++++ +++s a ll+++l++ ++++g+++ KIAA0880 398 QVCLSSMAAGMATFLPKFLErQFSITAS--YANLLIGCLSFPSVIVGIVV 445 ggrlsdrlgrglarkgeaeaerrrllllgllllalgllllafapsll... gg+l++rl g+ + + l llg+ll +++ l l+f++ ++++ KIAA0880 446 GGVLVKRLHLGPVG-------CGALCLLGMLLCLFFSLPLFFIGCSShqi 488 .................................................. + +++++ +++ + +++ + + + ++ ++ +++++ + ++ + + KIAA0880 489 agithqtsahpglelspscmeacscpldgfnpvcdpstrveyitpchagc 538 ........................................iallllalvl ++ ++ ++++ ++ + ++++ ++ +++ ++ ++ +ll++ l KIAA0880 539 sswvvqdaldnsqvfytncscvvegnpvlagscdstcshlVVPFLLLVSL 588 lGlgfggvfpalnalasdlappeaqerGtasGlyn.tagslggalgpllg ++ + +++++++ l+ + + +e a G+ + +++ l+++ +p++ KIAA0880 589 GSALACLTHTPSFMLILRGVKKE--DKTLAVGIQFmFLRILAWMPSPVIH 636 Gllld<-* G +d KIAA0880 637 GSAID 641 PF07690.6.fs: domain 2 of 2, from 290 to 491: score 40.0, E = 4.2e-11 *->gt.fWraaFlilgilallaallllvlfllpeppakasgkpeeeeagi +++ W Fli++++ +laa++ +f+++e+p+++++ ++ ++ KIAA0880 290 WVgAWWLGFLIAAGAVALAAIP--YFFFPKEMPKEKRELQFRRKVLA 334 ........................................alr.lll.p. ++++ +++++++++++++++++++++ + ++ + + + + ++ KIAA0880 335 vtdsparkgkdspskqspgestkkqdglvqiapnltviqfIKVfPRVlLq 384 lllillalflllaaflalltflplylllpllls.saglslsalaagllll l+ +++l+++l + ++ +++ ++lp +l++++ +++s a ll++ KIAA0880 385 TLRHPIFLLVVLSQVCLSSMAAGMATFLPKFLErQFSITAS--YANLLIG 432 alglggllgglllggrlsdrlgrglarkgeaeaerrrllllgllllalgl +l++ ++++g+++gg+l++rl g+ + + l llg+ll +++ KIAA0880 433 CLSFPSVIVGIVVGGVLVKRLHLGPVG-------CGALCLLGMLLCLFFS 475 lllafapslliallllal<-* l l+f++ ++ + ++++ KIAA0880 476 LPLFFIGCSS--HQIAGI 491 //