hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15402765/chunk_1/iprscan-20080502-15402765.nocrc
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Query sequence: KIAA0879
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF01663.12.ls Type I phosphodiesterase / nucleotide py   417.1   2.4e-122   1
PF01663.12.fs Type I phosphodiesterase / nucleotide py   415.4   7.3e-122   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF01663.12.fs   1/1      34   347 ..     1   461 []   415.4 7.3e-122
PF01663.12.ls   1/1      34   347 ..     1   461 []   417.1 2.4e-122

Alignments of top-scoring domains:
PF01663.12.fs: domain 1 of 1, from 34 to 347: score 415.4, E = 7.3e-122
                   *->pkllvislDGfradyldrlyhagltPnlsaLlaeeGvsapytltpvf
                      pkll++s+DGfradyl++    ++ P+l+++ ++eGv +++ +++vf
    KIAA0879    34    PKLLLVSFDGFRADYLKN----YEFPHLQNF-IKEGVLVEH-VKNVF 74   

                   PtlTfPnhytlvTGlyPesHGIvgNtfyDpktgavvyffeltdseavldp
                    t+TfPnhy++vTGly esHGIv+N++yD +t++    f ++   ++ dp
    KIAA0879    75 ITKTFPNHYSIVTGLYEESHGIVANSMYDAVTKKH---FSDS---NDKDP 118  

                   knWwdtttdglslkdnggepiwvtaqkqGgaiaaagvk.aaaffWPgsev
                     Ww           n + piwvt q q         +++aa +WPg++v
    KIAA0879   119 F-WW-----------NEAVPIWVTNQLQE-------NRsSAAAMWPGTDV 149  

                   aiidstyyrpqypqwvapgyrrPdireelaysgrpyngdvpvlagspldl
                    i+                 +  ++       + +yn +v          
    KIAA0879   150 PIH----------------DTISSY-------FMNYNSSV---------- 166  

                   pleervdtilkarfqpldlaslewlalsaklpgtderPdllllYleepDs
                   ++eer++ i+             wl  s+       +  + +lY+eepD+
    KIAA0879   167 SFEERLNNIT------------MWLNNSN------PPVTFATLYWEEPDA 198  

                   aGHkyGP.dnspeavldalrrvDraigrLieaLkerglledtnlivvSDH
                   +GHkyGP+d  +  +   l+++D++ig+L+++Lk  gl+e++n+i++SDH
    KIAA0879   199 SGHKYGPeD-KEN-MSRVLKKIDDLIGDLVQRLKMLGLWENLNVIITSDH 246  

                   Gmapvkspdkviflndpaylpdkgllalkeedledadsasiksdafavse
                   Gm+++ s d++i+l+      d+++++l                   ++ 
    KIAA0879   247 GMTQC-SQDRLINLD---SCIDHSYYTL-------------------IDL 273  

                   gpvariypnkpgeleevyearqavdelLsklpgvaevsklvallegdpgv
                    pva+i p  + +++evy++                      l+++ p++
    KIAA0879   274 SPVAAILP--KINRTEVYNK----------------------LKNCSPHM 299  

                   kvylkedlpkrlhyakneerypRigdlvlvadpGwyitadyywldekkap
                   +vylked+p+r++y++n    +Ri +++lvad+Gw+i+      +e+ + 
    KIAA0879   300 NVYLKEDIPNRFYYQHN----DRIQPIILVADEGWTIVL-----NESSQ- 339  

                   dfaktvdypgGtHGyd<-*
                           ++G+HGyd   
    KIAA0879   340 --------KLGDHGYD    347  

PF01663.12.ls: domain 1 of 1, from 34 to 347: score 417.1, E = 2.4e-122
                   *->pkllvislDGfradyldrlyhagltPnlsaLlaeeGvsapytltpvf
                      pkll++s+DGfradyl++    ++ P+l+++ ++eGv +++ +++vf
    KIAA0879    34    PKLLLVSFDGFRADYLKN----YEFPHLQNF-IKEGVLVEH-VKNVF 74   

                   PtlTfPnhytlvTGlyPesHGIvgNtfyDpktgavvyffeltdseavldp
                    t+TfPnhy++vTGly esHGIv+N++yD +t++    f ++   ++ dp
    KIAA0879    75 ITKTFPNHYSIVTGLYEESHGIVANSMYDAVTKKH---FSDS---NDKDP 118  

                   knWwdtttdglslkdnggepiwvtaqkqGgaiaaagvk.aaaffWPgsev
                     Ww           n + piwvt q q         +++aa +WPg++v
    KIAA0879   119 F-WW-----------NEAVPIWVTNQLQE-------NRsSAAAMWPGTDV 149  

                   aiidstyyrpqypqwvapgyrrPdireelaysgrpyngdvpvlagspldl
                    i+                 +  ++       + +yn +v          
    KIAA0879   150 PIH----------------DTISSY-------FMNYNSSV---------- 166  

                   pleervdtilkarfqpldlaslewlalsaklpgtderPdllllYleepDs
                   ++eer++ i+             wl  s+       +  + +lY+eepD+
    KIAA0879   167 SFEERLNNIT------------MWLNNSN------PPVTFATLYWEEPDA 198  

                   aGHkyGP.dnspeavldalrrvDraigrLieaLkerglledtnlivvSDH
                   +GHkyGP+d  +  +   l+++D++ig+L+++Lk  gl+e++n+i++SDH
    KIAA0879   199 SGHKYGPeD-KEN-MSRVLKKIDDLIGDLVQRLKMLGLWENLNVIITSDH 246  

                   Gmapvkspdkviflndpaylpdkgllalkeedledadsasiksdafavse
                   Gm+++ s d++i+l+      d+++++l                   ++ 
    KIAA0879   247 GMTQC-SQDRLINLD---SCIDHSYYTL-------------------IDL 273  

                   gpvariypnkpgeleevyearqavdelLsklpgvaevsklvallegdpgv
                    pva+i p  + +++evy++                      l+++ p++
    KIAA0879   274 SPVAAILP--KINRTEVYNK----------------------LKNCSPHM 299  

                   kvylkedlpkrlhyakneerypRigdlvlvadpGwyitadyywldekkap
                   +vylked+p+r++y++n    +Ri +++lvad+Gw+i+      +e+ + 
    KIAA0879   300 NVYLKEDIPNRFYYQHN----DRIQPIILVADEGWTIVL-----NESSQ- 339  

                   dfaktvdypgGtHGyd<-*
                           ++G+HGyd   
    KIAA0879   340 --------KLGDHGYD    347  

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