hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15385077/chunk_1/iprscan-20080502-15385077.nocrc
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Query sequence: KIAA0878
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00225                                                  82.6    4.6e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00225    1/2     330   462 ..     1   114 []     8.8      6.6
SM00225    2/2     496   594 ..     1   114 []    73.8  2.1e-17

Alignments of top-scoring domains:
SM00225: domain 1 of 2, from 330 to 462: score 8.8, E = 6.6
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +Dv++   +        +k ++a  Hk vL+a    S +F  lf+ +
    KIAA0878   330    VDVVFYNPD-------LKKVVEA--HKIVLCAV---SHVFMLLFNVk 364  

                   ........................................ieldDealli
                   ++++ ++++  +++++    ++++  ++ +++++++++ +++++D     
    KIAA0878   365 sptdiqdssiirttqdlfainrdtafpgashessgnpplrVIVKD----- 409  

                   evspeaFralLnflYt..kldlpeedvenveelLelAdfldSYGqip.lv
                   +   +++  +L+f+Y++       e  e++ + L+     dS G++ +++
    KIAA0878   410 ALFCSCLSDILRFIYSgaFQWEELE--EDIRKKLK-----DS-GDVSnVI 451  

                   elCeefllknl<-*
                   e+++++l++     
    KIAA0878   452 EKVKCILKTPG    462  

SM00225: domain 2 of 2, from 496 to 594: score 73.8, E = 2.1e-17
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       Dv++ ++g         + ++a  H+a+L a+   +++  a+f+++
    KIAA0878   496    ADVVFEIQG---------TTVPA--HRAILVAR---CEVMAAMFNGn 528  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     + ++  i++ +      vs e+F  +L++lYt++ ++      +++ l
    KIAA0878   529 ymeaksvlIPVYG------VSKETFLSFLEYLYTdSCCPAGI--FQAMCL 570  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L +A+++    q+ +l++ Ce f++++l   
    KIAA0878   571 LICAEMY----QVSrLQHICELFIITQL    594  

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