hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15385077/chunk_1/iprscan-20080502-15385077.nocrc
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Query sequence: KIAA0878
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00651.21.fs BTB/POZ domain                                  81.9    2.3e-22   2
PF00651.21.ls BTB/POZ domain                                  81.9    1.9e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   2/2     490   594 ..     1   135 []    80.1  7.2e-22
PF00651.21.ls   1/1     490   594 ..     1   135 []    81.9  1.9e-21

Alignments of top-scoring domains:
PF00651.21.fs: domain 2 of 2, from 490 to 594: score 80.1, E = 7.2e-22
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln+ ++     DV++ ++        g +++AH+a+L a+ ++  a+
    KIAA0878   490    LNKPMLA----DVVFEIQ--------GTTVPAHRAILVARCEVMAAM 524  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+g+     ++e +sv   i+  +vs e+f  +Le++Yt+          
    KIAA0878   525 FNGN-----YMEAKSVL--IPVYGVSKETFLSFLEYLYTD---------- 557  

                   Pssc.kseenvedlLaaAadllqipslvdaCeefliksl<-*
                    s+c++    ++ lL +A +++q+ +l+++Ce f+i++l   
    KIAA0878   558 -SCCpAGIFQAMCLLICA-EMYQVSRLQHICELFIITQL    594  

PF00651.21.ls: domain 1 of 1, from 490 to 594: score 81.9, E = 1.9e-21
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln+ ++     DV++ ++        g +++AH+a+L a+ ++  a+
    KIAA0878   490    LNKPMLA----DVVFEIQ--------GTTVPAHRAILVARCEVMAAM 524  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+g+     ++e +sv   i+  +vs e+f  +Le++Yt+          
    KIAA0878   525 FNGN-----YMEAKSVL--IPVYGVSKETFLSFLEYLYTD---------- 557  

                   Pssc.kseenvedlLaaAadllqipslvdaCeefliksl<-*
                    s+c++    ++ lL +A +++q+ +l+++Ce f+i++l   
    KIAA0878   558 -SCCpAGIFQAMCLLICA-EMYQVSRLQHICELFIITQL    594  

//