hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15352747/chunk_1/iprscan-20080502-15352747.nocrc
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Query sequence: KIAA0876
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 213.0    2.7e-59   1
SM00333                                                 100.3    2.2e-25   2
SM00545                                                  76.0    4.5e-18   1
SM00249                                                  65.8    5.3e-15   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00545    1/1      37    79 ..     1    45 []    76.0  4.5e-18
SM00558    1/1     166   332 ..     1   214 []   213.0  2.7e-59
SM00249    1/2     754   812 ..     1    39 []    34.6  1.4e-05
SM00249    2/2     874   930 ..     1    39 []    31.3  0.00013
SM00333    1/2     940   997 ..     1    60 []    49.0  6.3e-10
SM00333    2/2     998  1054 ..     1    60 []    51.3  1.2e-10

Alignments of top-scoring domains:
SM00545: domain 1 of 1, from 37 to 79: score 76.0, E = 4.5e-18
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                       i++f+Pt+eEFkD+ +Y+++I++ +G A+++G +K++PPk+WkP  
    KIAA0876    37    KIMTFRPTMEEFKDFNKYVAYIES-QG-AHRAGLAKIIPPKEWKP   79   

                   *
                    
    KIAA0876     -   -    

SM00558: domain 1 of 1, from 166 to 332: score 213.0, E = 2.7e-59
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      + +   wn+ +l               ++l+ ++ e +  +i g+++
    KIAA0876   166    DDDVAQWNIGSLR--------------TILDMVERE-CGTIIEGVNT 197  

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         pyly+Gm+   ++t+ wH++d+dlyS+Nylh+g++   K Wy+i
    KIAA0876   198 ------PYLYFGMW---KTTFAWHTEDMDLYSINYLHFGEP---KSWYAI 235  

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                   Ppe+  +le+l+  +        +p++++ ++ +l+h++t+isp+ lkk 
    KIAA0876   236 PPEHGKRLERLAIGF--------FPGSSQGCDAFLRHKMTLISPIILKKY 277  

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   +           +p  r++Q++Gef++++p+ yHa+fn+G fn+a++ NF
    KIAA0876   278 G-----------IPFSRITQEAGEFMITFPYGYHAGFNHG-FNCAESTNF 315  

                   aspewlpmglrlveelr<-*
                   a+++w+++g+ ++++ +   
    KIAA0876   316 ATLRWIDYGKVATQCTC    332  

SM00249: domain 1 of 2, from 754 to 812: score 34.6, E = 1.4e-05
                   *->yCvCgk..................g.llqCdkgCdrwyHv.Clgppl
                      +C+  +++++++ + ++  +++++++l+ C  +C+  +H +C+g+ +
    KIAA0876   754    MCFTSGgenteplpansyigddgtSpLIACG-KCCLQVHAsCYGIRP 799  

                   eepdg.wyCprCk<-*
                   e+++++w C+rC    
    KIAA0876   800 ELVNEgWTCSRCA    812  

SM00249: domain 2 of 2, from 874 to 930: score 31.3, E = 0.00013
                   *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep
                       C  C+k+ ++ +g ++qC+ ++C++++Hv+C++ ++   ++++ + 
    KIAA0876   874    KCvYCRKrmkkvsGaCIQCSyEHCSTSFHVtCAHAAGVlmepddwPY 920  

                   dg.wyCprCk<-*
                     +  C ++k   
    KIAA0876   921 VVsITCLKHK    930  

SM00333: domain 1 of 2, from 940 to 997: score 49.0, E = 6.3e-10
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                       +  +G++v+++ + +g++Yr+r+i+  s+ ++yeV+f+D  +++++
    KIAA0876   940    RAVSLGQVVITKNR-NGLYYRCRVIGAASQ-TCYEVNFDDGSYSDNL 984  

                   plsdlrqlpekfa<-*
                   +++++ + ++ ++   
    KIAA0876   985 YPESITSRDCVQL    997  

SM00333: domain 2 of 2, from 998 to 1054: score 51.3, E = 1.2e-10
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      +++ +G+lv  rw+ Dg+ Y+A+ i+  +    y+V f+D G++ +v
    KIAA0876   998    GPPSEGELVELRWT-DGNLYKAKFISSVTS-HIYQVEFED-GSQLTV 1041 

                   plsdlrqlpekfa<-*
                   +++d+ +l+e+++   
    KIAA0876  1042 KRGDIFTLEEELP    1054 

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