hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15352747/chunk_1/iprscan-20080502-15352747.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0876
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02373.13.fs JmjC domain                                    223.5    1.3e-65   1
PF02373.13.ls JmjC domain                                    225.5    1.1e-64   1
PF02375.7.ls jmjN domain                                     98.6    1.7e-26   1
PF02375.7.fs jmjN domain                                     96.8      6e-26   1
PF00628.19.fs PHD-finger                                      28.3    1.1e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02375.7.fs   1/1      39    84 ..     1    53 []    96.8    6e-26
PF02375.7.ls   1/1      39    84 ..     1    53 []    98.6  1.7e-26
PF02373.13.fs   1/1     199   315 ..     1   126 []   223.5  1.3e-65
PF02373.13.ls   1/1     199   315 ..     1   126 []   225.5  1.1e-64
PF00628.19.fs   1/2     780   814 ..    16    51 .]    21.2  2.1e-06

Alignments of top-scoring domains:
PF02375.7.fs: domain 1 of 1, from 39 to 84: score 96.8, E = 6e-26
                   *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
                      ++F+PtmeEF+D+++Y+a+I +++gA+++G++K++PPkeW      k
    KIAA0876    39    MTFRPTMEEFKDFNKYVAYI-ESQGAHRAGLAKIIPPKEW------K 78   

                   Ppcald<-*
                   P++++d   
    KIAA0876    79 PRQTYD    84   

PF02375.7.ls: domain 1 of 1, from 39 to 84: score 98.6, E = 1.7e-26
                   *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
                      ++F+PtmeEF+D+++Y+a+I +++gA+++G++K++PPkeW      k
    KIAA0876    39    MTFRPTMEEFKDFNKYVAYI-ESQGAHRAGLAKIIPPKEW------K 78   

                   Ppcald<-*
                   P++++d   
    KIAA0876    79 PRQTYD    84   

PF02373.13.fs: domain 1 of 1, from 199 to 315: score 223.5, E = 1.3e-65
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+Gm+++t++wH+Ed++lySinylhfg+pk WY+iP+e+++++e 
    KIAA0876   199    YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 244  

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                     +++  +  +P++ ++++ ++ lrh++tlisP++  L++ gip+ r++Q
    KIAA0876   245 --RLAIGF--FPGS-SQGCDAF-LRHKMTLISPII--LKKYGIPFSRITQ 286  

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   ++GEf+itfP++yHa+fN+Gfn+ae++NF   
    KIAA0876   287 EAGEFMITFPYGYHAGFNHGFNCAESTNF    315  

PF02373.13.ls: domain 1 of 1, from 199 to 315: score 225.5, E = 1.1e-64
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+Gm+++t++wH+Ed++lySinylhfg+pk WY+iP+e+++++e 
    KIAA0876   199    YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 244  

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                     +++  +  +P++ ++++ ++ lrh++tlisP++  L++ gip+ r++Q
    KIAA0876   245 --RLAIGF--FPGS-SQGCDAF-LRHKMTLISPII--LKKYGIPFSRITQ 286  

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   ++GEf+itfP++yHa+fN+Gfn+ae++NF   
    KIAA0876   287 EAGEFMITFPYGYHAGFNHGFNCAESTNF    315  

PF00628.19.fs: domain 1 of 2, from 780 to 814: score 21.2, E = 2.1e-06
                   *->llqCDgCdrwfHlaClgpplepeeipe.WyCpeCkpk<-*
                      l+ C +C+  +H++C+g+ +e   + e+W+C +C ++   
    KIAA0876   780    LIACGKCCLQVHASCYGIRPE--LVNEgWTCSRCAAH    814  

//