hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15285047/chunk_1/iprscan-20080502-15285047.nocrc
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Query sequence: KIAA0872
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03164.5.ls SAND protein                                   917.5   5.2e-273   1
PF03164.5.fs SAND protein                                   915.9   1.6e-272   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03164.5.fs   1/1     104   532 ..     1   502 []   915.9 1.6e-272
PF03164.5.ls   1/1     104   532 ..     1   502 []   917.5 5.2e-273

Alignments of top-scoring domains:
PF03164.5.fs: domain 1 of 1, from 104 to 532: score 915.9, E = 1.6e-272
                   *->dkiseawrlqkKhvFILSEAGKPIysryDGseealsStvGviqAlVS
                      d+++e+wr+q+KhvF+LSEAGKPIysry Gs+eals+t+Gv++AlVS
    KIAA0872   104    DPSDEEWRSQRKHVFVLSEAGKPIYSRY-GSVEALSATMGVMTALVS 149  

                   fvqsdgPSEdairSihadgnkivFLqKSPLiLVavSrttesSaaeLlqeL
                   fvqs+g   dair+i+a+++k+vFLq++PL+LVa+Srt++s aa+L++eL
    KIAA0872   150 FVQSAG---DAIRAIYAEDHKLVFLQQGPLLLVAMSRTSQS-AAQLRGEL 195  

                   ellYeQIlSiLTesqLeriFqkkGqNyDLRRLLsGsErlldnllasDsss
                   +++++QI+S+LT+++++riF++k qNyDLRRLL+GsEr+ld+ll      
    KIAA0872   196 LAVHAQIVSTLTRASVARIFAHK-QNYDLRRLLAGSERTLDRLL------ 238  

                   dslnrdpldLLlnairclPLnsSvRdqLssllqsqLEKRqdakakgLlFs
                   ds+++dp++LLl+a+rc+PL++++Rd+L++ll++       ++a+gL++s
    KIAA0872   239 DSMEQDPGALLLGAVRCVPLARPLRDALGALLRR-------CTAPGLALS 281  

                   iliArqnrLvalVRaKkylaeCrLHpaDLhLlfnLvssqtsslfesgEnW
                   +l+++ +rL+++++++++laeCrL+paDL+Ll+++v++   ++f++gE+W
    KIAA0872   282 VLAVG-GRLITAAQERNVLAECRLDPADLQLLLDWVGA---PAFAAGEAW 327  

                   vPICLPkFNpdGFfYAYisyPLcnDkesdidvCLlLlStdRdaFFalksv
                   +P+CLP+FNpdGFfYAY+++ L++     ++vCLlLl+t+R+aF+a++++
    KIAA0872   328 APVCLPRFNPDGFFYAYVAR-LDA-----MPVCLLLLGTQREAFHAMAAC 371  

                   kqkvvekLeknrgaleaLaealktsFN......pkysvsqvGsniPeLrH
                   ++ v++++++ +ga++aL+ea+++s N ++ + p+ysv++vG  +P+LrH
    KIAA0872   372 RRLVEDGMHA-LGAMRALGEAASFS-NassasaPAYSVQAVG--APGLRH 417  

                   FLYKsLDiPDhhKsskQftsPeleapykseeEreqileyElRLsalYqsL
                   FLYK+LDiPDhh++++QftsPeleapy++eeEr+       RLs+lY++L
    KIAA0872   418 FLYKPLDIPDHHRQLPQFTSPELEAPYSREEERQ-------RLSDLYHRL 460  

                   HsrlhhDNGNLksRpLklfyrvgekenEDLAmDEtqmDFSELDEYiiGNS
                   H+rlh+     +sRpL+l+y+v+eke+                       
    KIAA0872   461 HARLHS-----TSRPLRLIYHVAEKET----------------------- 482  

                   SFKqESVNmVLlAWVTgtFeLYlIfnNPlVtkalaikvVnKLlkWirKEE
                             LlAWVT++FeLY++++ PlVtka+ai vV+KLl+W++KEE
    KIAA0872   483 ----------LLAWVTSKFELYTCLS-PLVTKAGAILVVTKLLRWVKKEE 521  

                   dRLFIrnpltF<-*
                   dRLFIr+p+++   
    KIAA0872   522 DRLFIRYPPKY    532  

PF03164.5.ls: domain 1 of 1, from 104 to 532: score 917.5, E = 5.2e-273
                   *->dkiseawrlqkKhvFILSEAGKPIysryDGseealsStvGviqAlVS
                      d+++e+wr+q+KhvF+LSEAGKPIysry Gs+eals+t+Gv++AlVS
    KIAA0872   104    DPSDEEWRSQRKHVFVLSEAGKPIYSRY-GSVEALSATMGVMTALVS 149  

                   fvqsdgPSEdairSihadgnkivFLqKSPLiLVavSrttesSaaeLlqeL
                   fvqs+g   dair+i+a+++k+vFLq++PL+LVa+Srt++s aa+L++eL
    KIAA0872   150 FVQSAG---DAIRAIYAEDHKLVFLQQGPLLLVAMSRTSQS-AAQLRGEL 195  

                   ellYeQIlSiLTesqLeriFqkkGqNyDLRRLLsGsErlldnllasDsss
                   +++++QI+S+LT+++++riF++k qNyDLRRLL+GsEr+ld+ll      
    KIAA0872   196 LAVHAQIVSTLTRASVARIFAHK-QNYDLRRLLAGSERTLDRLL------ 238  

                   dslnrdpldLLlnairclPLnsSvRdqLssllqsqLEKRqdakakgLlFs
                   ds+++dp++LLl+a+rc+PL++++Rd+L++ll++       ++a+gL++s
    KIAA0872   239 DSMEQDPGALLLGAVRCVPLARPLRDALGALLRR-------CTAPGLALS 281  

                   iliArqnrLvalVRaKkylaeCrLHpaDLhLlfnLvssqtsslfesgEnW
                   +l+++ +rL+++++++++laeCrL+paDL+Ll+++v++   ++f++gE+W
    KIAA0872   282 VLAVG-GRLITAAQERNVLAECRLDPADLQLLLDWVGA---PAFAAGEAW 327  

                   vPICLPkFNpdGFfYAYisyPLcnDkesdidvCLlLlStdRdaFFalksv
                   +P+CLP+FNpdGFfYAY+++ L++     ++vCLlLl+t+R+aF+a++++
    KIAA0872   328 APVCLPRFNPDGFFYAYVAR-LDA-----MPVCLLLLGTQREAFHAMAAC 371  

                   kqkvvekLeknrgaleaLaealktsFN......pkysvsqvGsniPeLrH
                   ++ v++++++ +ga++aL+ea+++s N ++ + p+ysv++vG  +P+LrH
    KIAA0872   372 RRLVEDGMHA-LGAMRALGEAASFS-NassasaPAYSVQAVG--APGLRH 417  

                   FLYKsLDiPDhhKsskQftsPeleapykseeEreqileyElRLsalYqsL
                   FLYK+LDiPDhh++++QftsPeleapy++eeEr+       RLs+lY++L
    KIAA0872   418 FLYKPLDIPDHHRQLPQFTSPELEAPYSREEERQ-------RLSDLYHRL 460  

                   HsrlhhDNGNLksRpLklfyrvgekenEDLAmDEtqmDFSELDEYiiGNS
                   H+rlh+     +sRpL+l+y+v+eke+                       
    KIAA0872   461 HARLHS-----TSRPLRLIYHVAEKET----------------------- 482  

                   SFKqESVNmVLlAWVTgtFeLYlIfnNPlVtkalaikvVnKLlkWirKEE
                             LlAWVT++FeLY++++ PlVtka+ai vV+KLl+W++KEE
    KIAA0872   483 ----------LLAWVTSKFELYTCLS-PLVTKAGAILVVTKLLRWVKKEE 521  

                   dRLFIrnpltF<-*
                   dRLFIr+p+++   
    KIAA0872   522 DRLFIRYPPKY    532  

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