hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15220569/chunk_1/iprscan-20080502-15220569.nocrc
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Query sequence: KIAA0868
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00282                                                 475.5   2.6e-138   4
SM00231                                                  94.8      1e-23   1
SM00294                                                  38.8    7.2e-07   1
SM00181                                                  31.2    0.00014   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00231    1/1      42   189 ..     1   199 []    94.8    1e-23
SM00282    1/4     216   353 ..     1   137 []   124.5  1.2e-32
SM00282    2/4     401   537 ..     1   137 []   108.9  5.8e-28
SM00181    1/2     565   599 ..     1    32 []    22.3    0.066
SM00282    3/4     827   953 ..     1   137 []   135.1  7.2e-36
SM00181    2/2     974  1010 ..     1    32 []     8.9       42
SM00282    4/4    1055  1195 ..     1   137 []   107.0  2.2e-27
SM00294    1/1    1290  1308 ..     1    19 []    38.8  7.2e-07

Alignments of top-scoring domains:
SM00231: domain 1 of 1, from 42 to 189: score 94.8, E = 1e-23
                   *->eCnepl..GleggeiadsqitassstgaarelgllgwaakiaRlngn
                      +C+epl +Gl   ++a+    +ss++g+        + + +a +n+ 
    KIAA0868    42    KCDEPLvsGL--PHVAF--SSSSSISGS--------YSPGYAKINK- 75   

                   glnedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgvTitGr
                       ++g+g+W+p +          d ++w++vD+g   r+ +   i++ 
    KIAA0868    76 ----RGGAGGWSPSDS---------DHYQWLQVDFGN--RKQISA-IATQ 109  

                   rrrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtge
                    r    +++ dwvt y + y+d +r         +W +y      + +g+
    KIAA0868   110 GR----YSSSDWVTQYRMLYSDTGR---------NWKPY------HQDGN 140  

                   skvFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRlE
                     +F+gN+++++vv++++  Pi+ARYvRi+P+ +n      +++i+lR+E
    KIAA0868   141 IWAFPGNINSDGVVRHELQHPIIARYVRIVPLDWN-----GEGRIGLRIE 185  

                   LlGC<-*
                   ++GC   
    KIAA0868   186 VYGC    189  

SM00282: domain 1 of 4, from 216 to 353: score 124.5, E = 1.2e-32
                   *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
                       +  i + F+T +++G++l+  +++gd+++leL+        +lvl+
    KIAA0868   216    LkDVIALNFKTSESEGVILHGEgqQGDYITLELK------KAKLVLS 256  

                   ydlGsst...tggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg
                   ++lGs++ ++++g ++++++      l+D +WH+V++er+grs++L++D 
    KIAA0868   257 LNLGSNQlgpIYGHTSVMTG----SLLDDHHWHSVVIERQGRSINLTLD- 301  

                   gnpvsges....t.LdldkeesgplylGGlPe.....lpvspgFrGCirn
                    + ++ +++++ + Ldld      + +GG+P ++++++ ++++F+GC+++
    KIAA0868   302 RSMQHFRTngefDyLDLD----YEITFGGIPFsgkpsSSSRKNFKGCMES 347  

                   lrvngk<-*
                   + +ng+   
    KIAA0868   348 INYNGV    353  

SM00282: domain 2 of 4, from 401 to 537: score 108.9, E = 5.8e-28
                   *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl
                      + +s+sf+FrT+ pnGlL++++  +    +++ L       + ++ +
    KIAA0868   401    DlFSVSFQFRTWNPNGLLVFSHfadNLGNVEIDLT------ESKVGV 441  

                   rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn
                   +++   + +++ + ++s+      lnDGqWH V++  +++ + L++D g+
    KIAA0868   442 HINITQT-KMSQIDISSG----SGLNDGQWHEVRFLAKENFAILTID-GD 485  

                   pvsges..t.LdldkeesgplylGGlPe.......lpvspgFrGCirnlr
                   ++s++ ++++L+++   ++++++GG  ++ +++++++ +p+F+GC++ ++
    KIAA0868   486 EASAVRtnSpLQVKT--GEKYFFGGFLNqmnnsshSVLQPSFQGCMQLIQ 533  

                   vngk<-*
                   v+ +   
    KIAA0868   534 VDDQ    537  

SM00181: domain 1 of 2, from 565 to 599: score 22.3, E = 0.066
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                       C ++ C++G     G+C  + +s++C+C + Gy+g +C    
    KIAA0868   565    RCVpnHCEHG-----GKCSqtwdSFKCtCDETGYSGaTCH    599  

SM00282: domain 3 of 4, from 827 to 953: score 135.1, E = 7.2e-36
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                      t+ +isf+F+T  p+G+ l + ++ df+ leL+     +   + +++
    KIAA0868   827    TsADISFYFKTLTPWGVFLENMgKEDFIKLELK-----SATEVSFSF 868  

                   dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv
                   d G+    gp+++ + s  ptplnD qWHrV++ern ++++L+VD  +p+
    KIAA0868   869 DVGN----GPVEIVVRS--PTPLNDDQWHRVTAERNVKQASLQVD-RLPQ 911  

                   sges......t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk<
                   + ++ +++++t+L+l     ++l++GG+     ++gF GCir+lr+ng+ 
    KIAA0868   912 QIRKapteghTrLELY----SQLFVGGAG---GQQGFLGCIRSLRMNGV  953  

                   -*
                     
    KIAA0868     -    -    

SM00181: domain 2 of 2, from 974 to 1010: score 8.9, E = 42
                   *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg..rCe<-*
                       C + ++ C+nG     G+C+++ ++y+C+C  +  ++++ C    
    KIAA0868   974    HCTsygtNCENG-----GKCLeryhGYSCdCS-NTAYDgtFCN    1010 

SM00282: domain 4 of 4, from 1055 to 1195: score 107.0, E = 2.2e-27
                   *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
                       +++i fsF Tt++  +Lly+++ ++dfla+ ++     + G l+ r
    KIAA0868  1055    AqEEIRFSFSTTKAPCILLYISsfTTDFLAVLVK-----PTGSLQIR 1096 

                   ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnp
                   y+lG+  t++p  + +d+   + ++ Gq+H+V+++r ++++ L++D++ +
    KIAA0868  1097 YNLGG--TREPYNIDVDH---RNMANGQPHSVNITRHEKTIFLKLDHYPS 1141 

                   vsges.....t.LdldkeesgplylGGlPe.........lpvspgFrGCi
                   vs + +++++t ++++     +l+lG + e+++ +++ ++ ++pgF+GC+
    KIAA0868  1142 VSYHLpsssdTlFNSP----KSLFLGKVIEtgkidqeihKYNTPGFTGCL 1187 

                   rnlrvngk<-*
                   +++++n+    
    KIAA0868  1188 SRVQFNQI    1195 

SM00294: domain 1 of 1, from 1290 to 1308: score 38.8, E = 7.2e-07
                   *->myrykkRdkGSYhtnEakg<-*
                      ++ry++R+kG+YhtnEakg   
    KIAA0868  1290    LIRYMFRHKGTYHTNEAKG    1308 

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