hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15220569/chunk_1/iprscan-20080502-15220569.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0868 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02210.14.ls Laminin G domain 467.6 1.5e-137 4 PF02210.14.fs Laminin G domain 460.2 2.5e-135 4 PF00054.13.ls Laminin G domain 177.4 3.3e-50 4 PF00054.13.fs Laminin G domain 173.7 1.6e-49 4 PF00754.15.ls F5/8 type C domain 147.7 2.9e-41 1 PF00754.15.fs F5/8 type C domain 145.9 6.9e-41 1 PF00008.17.fs EGF-like domain 48.1 1.4e-12 2 PF00008.17.ls EGF-like domain 51.8 2.1e-12 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00754.15.ls 1/1 55 186 .. 1 163 [] 147.7 2.9e-41 PF00754.15.fs 1/1 55 186 .. 1 163 [] 145.9 6.9e-41 PF00054.13.fs 1/4 224 356 .. 1 159 [] 59.5 9.9e-17 PF02210.14.fs 1/4 224 353 .. 1 141 [] 129.6 1.8e-37 PF02210.14.ls 1/4 224 353 .. 1 141 [] 131.4 2.3e-36 PF00054.13.ls 1/4 224 356 .. 1 159 [] 61.4 2.8e-15 PF02210.14.fs 2/4 409 537 .. 1 141 [] 98.0 3e-28 PF00054.13.ls 2/4 409 540 .. 1 159 [] 55.7 1.4e-13 PF02210.14.ls 2/4 409 537 .. 1 141 [] 99.9 7.1e-27 PF00054.13.fs 2/4 409 540 .. 1 159 [] 53.9 4.2e-15 PF00008.17.fs 1/2 566 598 .. 1 38 [] 31.0 9e-08 PF00008.17.ls 1/2 566 598 .. 1 38 [] 32.8 1.1e-06 PF02210.14.ls 3/4 835 953 .. 1 141 [] 124.9 2e-34 PF00054.13.ls 3/4 835 956 .. 1 159 [] 49.3 1.2e-11 PF02210.14.fs 3/4 835 953 .. 1 141 [] 123.2 1.4e-35 PF00054.13.fs 3/4 863 956 .. 40 159 .] 50.8 3.2e-14 PF02210.14.fs 4/4 1063 1195 .. 1 141 [] 109.4 1.4e-31 PF02210.14.ls 4/4 1063 1195 .. 1 141 [] 111.3 2.5e-30 Alignments of top-scoring domains: PF00754.15.ls: domain 1 of 1, from 55 to 186: score 147.7, E = 2.9e-41 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Ss+ sgs+++g+a+ + +a ++Ws+ KIAA0868 55 AFSSSSSISGSYSPGYAKINKRGGA----------------GGWSP- 84 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd ++ +d+ qwlqvD+g k+i+++ tqgr+++ + +v+ Y+ ySd KIAA0868 85 SD------SDHYQWLQVDFGNRKQISAIATQGRYSSSD-WVTQYRMLYSD 127 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW+++ + +g+ + F+gn ++d++v++ + +pi+ARY KIAA0868 128 TG-R--NWKPYHQ--------DGnIWAFpGNiNSDgVVRHELQHPIIARY 166 vRivptswnggggiasraEl<-* vRivp++wng+g+i++r E+ KIAA0868 167 VRIVPLDWNGEGRIGLRIEV 186 PF00754.15.fs: domain 1 of 1, from 55 to 186: score 145.9, E = 6.9e-41 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Ss+ sgs+++g+a+ + +a ++Ws+ KIAA0868 55 AFSSSSSISGSYSPGYAKINKRGGA----------------GGWSP- 84 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd ++ +d+ qwlqvD+g k+i+++ tqgr+++ + +v+ Y+ ySd KIAA0868 85 SD------SDHYQWLQVDFGNRKQISAIATQGRYSSSD-WVTQYRMLYSD 127 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW+++ + +g+ + F+gn ++d++v++ + +pi+ARY KIAA0868 128 TG-R--NWKPYHQ--------DGnIWAFpGNiNSDgVVRHELQHPIIARY 166 vRivptswnggggiasraEl<-* vRivp++wng+g+i++r E+ KIAA0868 167 VRIVPLDWNGEGRIGLRIEV 186 PF00054.13.fs: domain 1 of 4, from 224 to 356: score 59.5, E = 9.9e-17 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+T+e++G++l G+ ++ D++ leL + +l +s++l KIAA0868 224 FKTSESEGVIL---HGEGQQG--------DYITLELKKAKLVLSLNL 259 Gsgrlrpav....vrsgdkvlnDGkWHsvelerngrsgtLsVdgearskk Gs+ l p++++++v+ g l+D +WHsv++er grs++L +d KIAA0868 260 GSNQLGPIYghtsVMTGSL-LDDHHWHSVVIERQGRSINLTLDRSMQ--- 305 tLgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaisps + ++++ ++ Ld+d+ + +GG+P ++ k++ +++ KIAA0868 306 -------HFRTNGEFDY----LDLDYEITFGGIP---FSGKPSS-SSRKN 340 fkGCirdviingkpld<-* fkGC+ ++ ng+++ KIAA0868 341 FKGCMESINYNGVNIT 356 PF02210.14.fs: domain 1 of 4, from 224 to 353: score 129.6, E = 1.8e-37 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+T +++G++l+ +g++g d +++LeL+ +lvl+++l KIAA0868 224 FKT-SESEGVILHGEGQqG---------D-YITLELKKAKLVLSLNL 259 G......sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g. G+++ ++ g++++++g+ l+D +WH+V++er+grs+ L++D + ++ ++ KIAA0868 260 GsnqlgpIYGhTSVMTGsLLDDHHWHSVVIERQGRSINLTLDRSmQHfRt 309 spgssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCir +++ + +l+l++++ +GG+p s+k+s+++ +++F+GC++ KIAA0868 310 NGEFD---YLDLDYEITFGGIPFSGKPSSSS----------RkNFKGCME 346 nvringe<-* ++ +ng+ KIAA0868 347 SINYNGV 353 PF02210.14.ls: domain 1 of 4, from 224 to 353: score 131.4, E = 2.3e-36 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+T +++G++l+ +g++g d +++LeL+ +lvl+++l KIAA0868 224 FKT-SESEGVILHGEGQqG---------D-YITLELKKAKLVLSLNL 259 G......sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g. G+++ ++ g++++++g+ l+D +WH+V++er+grs+ L++D + ++ ++ KIAA0868 260 GsnqlgpIYGhTSVMTGsLLDDHHWHSVVIERQGRSINLTLDRSmQHfRt 309 spgssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCir +++ + +l+l++++ +GG+p s+k+s+++ +++F+GC++ KIAA0868 310 NGEFD---YLDLDYEITFGGIPFSGKPSSSS----------RkNFKGCME 346 nvringe<-* ++ +ng+ KIAA0868 347 SINYNGV 353 PF00054.13.ls: domain 1 of 4, from 224 to 356: score 61.4, E = 2.8e-15 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+T+e++G++l G+ ++ D++ leL + +l +s++l KIAA0868 224 FKTSESEGVIL---HGEGQQG--------DYITLELKKAKLVLSLNL 259 Gsgrlrpav....vrsgdkvlnDGkWHsvelerngrsgtLsVdgearskk Gs+ l p++++++v+ g l+D +WHsv++er grs++L +d KIAA0868 260 GSNQLGPIYghtsVMTGSL-LDDHHWHSVVIERQGRSINLTLDRSMQ--- 305 tLgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaisps + ++++ ++ Ld+d+ + +GG+P ++ k++ +++ KIAA0868 306 -------HFRTNGEFDY----LDLDYEITFGGIP---FSGKPSS-SSRKN 340 fkGCirdviingkpld<-* fkGC+ ++ ng+++ KIAA0868 341 FKGCMESINYNGVNIT 356 PF02210.14.fs: domain 2 of 4, from 409 to 537: score 98.0, E = 3e-28 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl FRT + pnGlL +++ +++ + + + L + ++ ++++ KIAA0868 409 FRT-WNPNGLLVFSHFAdN--------LG-NVEIDLTESKVGVHINI 445 G..sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs ++ ++ ++sg+ lnDGqWH V++ +++ + L++Dg +++ ++ + KIAA0868 446 TqtKMSqIDISSGsGLNDGQWHEVRFLAKENFAILTIDGDeASaVrTNSP 495 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri ++++ + +++GG+ + ++ s+ ++ +++F+GC++ +++ KIAA0868 496 L---QVKTGEKYFFGGFLNQMNNSSHSVL--------QpSFQGCMQLIQV 534 nge<-* +++ KIAA0868 535 DDQ 537 PF00054.13.ls: domain 2 of 4, from 409 to 540: score 55.7, E = 1.4e-13 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl FRT++p+GlL + +++ + + + L+ ++ v+ + KIAA0868 409 FRTWNPNGLLVFSHFADNLGN----------VEIDLTESKVGVHINI 445 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG ++ + ++ + sg lnDG+WH v + ++L +dg ++ KIAA0868 446 TQTKMSQIDISSGSG-LNDGQWHEVRFLAKENFAILTIDGDEA------- 487 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC s+v+++spl + +++ +k ++GG+ +q ++ + +psf GC KIAA0868 488 SAVRTNSPL---Q----VKTGEKYFFGGFL--NQMNNSSHSVLQPSFQGC 528 irdviingkpld<-* ++ + ++ + ++ KIAA0868 529 MQLIQVDDQLVN 540 PF02210.14.ls: domain 2 of 4, from 409 to 537: score 99.9, E = 7.1e-27 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl FRT + pnGlL +++ +++ + + + L + ++ ++++ KIAA0868 409 FRT-WNPNGLLVFSHFAdN--------LG-NVEIDLTESKVGVHINI 445 G..sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs ++ ++ ++sg+ lnDGqWH V++ +++ + L++Dg +++ ++ + KIAA0868 446 TqtKMSqIDISSGsGLNDGQWHEVRFLAKENFAILTIDGDeASaVrTNSP 495 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri ++++ + +++GG+ + ++ s+ ++ +++F+GC++ +++ KIAA0868 496 L---QVKTGEKYFFGGFLNQMNNSSHSVL--------QpSFQGCMQLIQV 534 nge<-* +++ KIAA0868 535 DDQ 537 PF00054.13.fs: domain 2 of 4, from 409 to 540: score 53.9, E = 4.2e-15 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl FRT++p+GlL + +++ + + + L+ ++ v+ + KIAA0868 409 FRTWNPNGLLVFSHFADNLGN----------VEIDLTESKVGVHINI 445 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG ++ + ++ + sg lnDG+WH v + ++L +dg ++ KIAA0868 446 TQTKMSQIDISSGSG-LNDGQWHEVRFLAKENFAILTIDGDEA------- 487 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC s+v+++spl + +++ +k ++GG+ +q ++ + +psf GC KIAA0868 488 SAVRTNSPL---Q----VKTGEKYFFGGFL--NQMNNSSHSVLQPSFQGC 528 irdviingkpld<-* ++ + ++ + ++ KIAA0868 529 MQLIQVDDQLVN 540 PF00008.17.fs: domain 1 of 2, from 566 to 598: score 31.0, E = 9e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pn C +gG+C +t+++++C C++ +y+G +C KIAA0868 566 CVPN--HCEHGGKCSQTWDSFKCTCDET---GYSGATC 598 PF00008.17.ls: domain 1 of 2, from 566 to 598: score 32.8, E = 1.1e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pn C +gG+C +t+++++C C++ +y+G +C KIAA0868 566 CVPN--HCEHGGKCSQTWDSFKCTCDET---GYSGATC 598 PF02210.14.ls: domain 3 of 4, from 835 to 953: score 124.9, E = 2e-34 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGr.lvlryd F+T p G+ l + gk++ f+ LeL+ +++ +++d KIAA0868 835 FKT-LTPWGVFLENMGKeD-----------FIKLELKSATeVSFSFD 869 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ +++++s++plnD qWH+V++ern ++++L+VD +++ +++p + KIAA0868 870 VGnGPVeIVVRSPtPLNDDQWHRVTAERNVKQASLQVDRLpQQiRkAPTE 919 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri +t l+l ++l++GG+ ++gF GCir++r+ KIAA0868 920 GHT-RLELYSQLFVGGAGG------------------QqGFLGCIRSLRM 950 nge<-* ng+ KIAA0868 951 NGV 953 PF00054.13.ls: domain 3 of 4, from 835 to 956: score 49.3, E = 1.2e-11 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdG.rlevsyd F+T p G+ l ++ ++ DF+ leL +++ +s+d KIAA0868 835 FKTLTPWGVFL-----ENMGKE-------DFIKLELKSAtEVSFSFD 869 lGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLg +G+g ++vvrs+++ lnD +WH+v++ern ++++L+Vd KIAA0868 870 VGNG-PVEIVVRSPTP-LNDDQWHRVTAERNVKQASLQVDRLPQ------ 911 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG + +p+ ++t L + +L+vGG+ + + +f G KIAA0868 912 ---QIRKAPTEGHT---RLELYSQLFVGGAG---------G---QQGFLG 943 Cirdviingkpld<-* Cir++ +ng+ ld KIAA0868 944 CIRSLRMNGVTLD 956 PF02210.14.fs: domain 3 of 4, from 835 to 953: score 123.2, E = 1.4e-35 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGr.lvlryd F+T p G+ l + gk++ f+ LeL+ +++ +++d KIAA0868 835 FKT-LTPWGVFLENMGKeD-----------FIKLELKSATeVSFSFD 869 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ +++++s++plnD qWH+V++ern ++++L+VD +++ +++p + KIAA0868 870 VGnGPVeIVVRSPtPLNDDQWHRVTAERNVKQASLQVDRLpQQiRkAPTE 919 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri +t l+l ++l++GG+ ++gF GCir++r+ KIAA0868 920 GHT-RLELYSQLFVGGAGG------------------QqGFLGCIRSLRM 950 nge<-* ng+ KIAA0868 951 NGV 953 PF00054.13.fs: domain 3 of 4, from 863 to 956: score 50.8, E = 3.2e-14 *->rlevsydlGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVd ++ +s+d+G+g ++vvrs+++ lnD +WH+v++ern ++++L+Vd KIAA0868 863 EVSFSFDVGNG-PVEIVVRSPTP-LNDDQWHRVTAERNVKQASLQVD 907 gearskktLgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkar + +p+ ++t L + +L+vGG+ KIAA0868 908 RLPQ---------QIRKAPTEGHT---RLELYSQLFVGGAG--------- 936 rlaispsfkGCirdviingkpld<-* + + +f GCir++ +ng+ ld KIAA0868 937 G---QQGFLGCIRSLRMNGVTLD 956 PF02210.14.fs: domain 4 of 4, from 1063 to 1195: score 109.4, E = 1.4e-31 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLv.dGrlvlryd F T t++ +Lly+++ ++ d fla+ +++ G l++ry+ KIAA0868 1063 FST-TKAPCILLYISSFtT---------D-FLAVLVKpTGSLQIRYN 1098 lG..sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spg lG+++++ + ++++++++Gq H+V ++r+++++ L++D +++v++++p KIAA0868 1099 LGgtREPyNIDVDHrNMANGQPHSVNITRHEKTIFLKLDHYpSVsYhLPS 1148 ssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvr ssdt +n + +l+lG + e +k + ++ ++gF+GC+++v+ KIAA0868 1149 SSDT-LFNSPKSLFLGKVIETGKIDQEIHKYN------TpGFTGCLSRVQ 1191 inge<-* +n + KIAA0868 1192 FNQI 1195 PF02210.14.ls: domain 4 of 4, from 1063 to 1195: score 111.3, E = 2.5e-30 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLv.dGrlvlryd F T t++ +Lly+++ ++ d fla+ +++ G l++ry+ KIAA0868 1063 FST-TKAPCILLYISSFtT---------D-FLAVLVKpTGSLQIRYN 1098 lG..sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spg lG+++++ + ++++++++Gq H+V ++r+++++ L++D +++v++++p KIAA0868 1099 LGgtREPyNIDVDHrNMANGQPHSVNITRHEKTIFLKLDHYpSVsYhLPS 1148 ssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvr ssdt +n + +l+lG + e +k + ++ ++gF+GC+++v+ KIAA0868 1149 SSDT-LFNSPKSLFLGKVIETGKIDQEIHKYN------TpGFTGCLSRVQ 1191 inge<-* +n + KIAA0868 1192 FNQI 1195 //