hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15064721/chunk_1/iprscan-20080502-15064721.nocrc
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Query sequence: KIAA0859
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF08241.2.fs    Methyltransferase domain                 53.6    7.8e-14   2
PF08241.2.ls    Methyltransferase domain                 43.2    8.3e-10   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF08241.2.fs      1/2      61   166 ..     1    99 []    41.2  1.7e-10
PF08241.2.ls      1/1      61   166 ..     1    99 []    43.2  8.3e-10

Alignments of top-scoring domains:
PF08241.2.fs: domain 1 of 2, from 61 to 166: score 41.2, E = 1.7e-10
                   *->LDvGcGtGllaraLarrvgpgarvtGvDlspemlalArerapragle
                      L +GcG+  l+++L +   +  +++ +D+s+  +++ +e ++ + ++
    KIAA0859    61    LVIGCGNSELSEQLYDV--GYRDIVNIDISEVVIKQMKECNATRRPQ 105  

                   n.fvvgDaedLPfpDesFDlVvsslvlhhl........aedperalrEia
                    +f+++D++++ fpD+sF +V+  ++l  + +++++++ + ++r l+E+ 
    KIAA0859   106 MsFLKMDMTQMEFPDASFQVVLDKGTLDAVltdeeektLQQVDRMLAEVG 155  

                   RVLKPGGklvi<-*
                   RVL  GG+ ++   
    KIAA0859   156 RVLQVGGRYLC    166  

PF08241.2.ls: domain 1 of 1, from 61 to 166: score 43.2, E = 8.3e-10
                   *->LDvGcGtGllaraLarrvgpgarvtGvDlspemlalArerapragle
                      L +GcG+  l+++L +   +  +++ +D+s+  +++ +e ++ + ++
    KIAA0859    61    LVIGCGNSELSEQLYDV--GYRDIVNIDISEVVIKQMKECNATRRPQ 105  

                   n.fvvgDaedLPfpDesFDlVvsslvlhhl........aedperalrEia
                    +f+++D++++ fpD+sF +V+  ++l  + +++++++ + ++r l+E+ 
    KIAA0859   106 MsFLKMDMTQMEFPDASFQVVLDKGTLDAVltdeeektLQQVDRMLAEVG 155  

                   RVLKPGGklvi<-*
                   RVL  GG+ ++   
    KIAA0859   156 RVLQVGGRYLC    166  

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