hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15032749/chunk_1/iprscan-20080502-15032749.nocrc
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Query sequence: KIAA0857
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                  42.8    4.5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/1     100   223 ..     1    92 []    42.8  4.5e-08

Alignments of top-scoring domains:
SM00239: domain 1 of 1, from 100 to 223: score 42.8, E = 4.5e-08
                   *->tLtvkiisArnLp..........DPYVkvs......kTkvvkktlsg
                       + v++++Ar+L++++++ ++++D Y +++ ++ +  T+vv+kt   
    KIAA0857   100    HVQVTVLRARGLRgkssgagstsDAYTVIQvgrekySTSVVEKTHG- 145  

                   fNPvWnEesetFeFevpp..........................s.Leie
                    +P+W E   ++ Fe+pp+  ++  + ++ + ++ +   ++    +L+++
    KIAA0857   146 -CPEWRE---ECSFELPPgaldgllraqeadagpapwaassaaaCeLVLT 191  

                   VyDk......dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                    ++++  + ++f+G++t+               l+e+ + gr ++    
    KIAA0857   192 TMHRsligvdKFLGQATVA--------------LDEVFgAGRAqHT    223  

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