hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15013308/chunk_1/iprscan-20080502-15013308.nocrc
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Query sequence: KIAA0856
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 112.4      5e-29   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/8     187   228 ..     1    46 []    10.0       13
SM00320    2/8     435   472 ..     1    46 []     0.0  4.9e+02
SM00320    3/8    1957  1992 ..     1    46 []    10.0       13
SM00320    4/8    1996  2035 ..     1    46 []     9.5       16
SM00320    5/8    2042  2084 ..     1    46 []    19.1     0.46
SM00320    6/8    2090  2129 ..     1    46 []    23.6    0.028
SM00320    7/8    2132  2171 ..     1    46 []    37.7  1.5e-06
SM00320    8/8    2184  2222 ..     1    46 []     2.5    2e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 8, from 187 to 228: score 10.0, E = 13
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      + +++r  ++ gH ++s+++ v+  p         l+++ ++D+++r
    KIAA0856   187    SvEVIRATPsaGHLSSSSIYPVCLAPY--------LVVTTCsDNKVR 225  

                   lWd<-*
                   +W+   
    KIAA0856   226 FWK    228  

SM00320: domain 2 of 8, from 435 to 472: score 0.0, E = 4.9e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  l+++ +g  +     s+++  dg        +++ + D+  +++
    KIAA0856   435    SiDLVSSVDGTPS--LPVSLSWVRDG--------ILVVGmDCEMHVY 471  

                   d<-*
                       
    KIAA0856   472 A    472  

SM00320: domain 3 of 8, from 1957 to 1992: score 10.0, E = 13
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +    r l+       V  ++ +p +      ++ ++g +Dg++r++
    KIAA0856  1957    SvLMKRNLH------NVKRMTSHPVH------QYYLTGAqDGSVRMF 1991 

                   d<-*
                   +   
    KIAA0856  1992 E    1992 

SM00320: domain 4 of 8, from 1996 to 2035: score 9.5, E = 16
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++l++  ++ ++  +Vt + f++ g      n   ++++ g + +W
    KIAA0856  1996    PqQLVCFRQAGNA--RVTRLYFNSQG------NKCGVADgEGFLSIW 2034 

                   d<-*
                       
    KIAA0856  2035 Q    2035 

SM00320: domain 5 of 8, from 2042 to 2084: score 19.1, E = 0.46
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt...i
                      ++k+ +++++H++  + ++ af  ++      +l+a++++ + ++++
    KIAA0856  2042    NpKPYMSWQCHSK--ATSDFAFITSS------SLVATSGhSNDnrnV 2080 

                   rlWd<-*
                   +lWd   
    KIAA0856  2081 CLWD    2084 

SM00320: domain 6 of 8, from 2090 to 2129: score 23.6, E = 0.028
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++l++ +++H++  + t +++ p        +ll+sg++ g+++++
    KIAA0856  2090    GnSLIHGFTCHDH--GATVLQYAPKQ------QLLISGGrKGHVCIF 2128 

                   d<-*
                   d   
    KIAA0856  2129 D    2129 

SM00320: domain 7 of 8, from 2132 to 2171: score 37.7, E = 1.5e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++l++t+++H++  ++ ++a +p        +++ +gs  g+i++W
    KIAA0856  2132    QrQLIHTFQAHDS--AIKALALDPYE------EYFTTGSaEGNIKVW 2170 

                   d<-*
                       
    KIAA0856  2171 R    2171 

SM00320: domain 8 of 8, from 2184 to 2222: score 2.5, E = 2e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   ++++   +  +V  +++ +        n+l+s++ Dgt++  
    KIAA0856  2184    EhAKQSIFRNIGA--GVMQIDIIQG-------NRLFSCGaDGTLKTR 2221 

                   d<-*
                       
    KIAA0856  2222 V    2222 

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