hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15013308/chunk_1/iprscan-20080502-15013308.nocrc
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Query sequence: KIAA0856
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                        70.6    6.5e-19   5
PF00400.22.ls WD domain, G-beta repeat                        72.5    1.3e-18   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/5     202   228 ..     9    38 .]    10.7    0.047
PF00400.22.fs   3/5    2091  2129 ..     1    38 []    18.9  0.00024
PF00400.22.fs   4/5    2133  2171 ..     1    38 []    31.2  7.8e-08
PF00400.22.ls   5/6    2133  2171 ..     1    38 []    33.2  8.3e-07

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 5, from 202 to 228: score 10.7, E = 0.047
                   *->tstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +s+++ v+ +p    l+++ ++D++++ W+   
    KIAA0856   202    SSSIYPVCLAPY---LVVTTCSDNKVRFWK    228  

PF00400.22.fs: domain 3 of 5, from 2091 to 2129: score 18.9, E = 0.00024
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++ ++ H ++ t + ++p  ++ll+sg+r g+++i+d   
    KIAA0856  2091    NSLIhGFtCHDHGATVLQYAPK-QQLLISGGRKGHVCIFD    2129 

PF00400.22.fs: domain 4 of 5, from 2133 to 2171: score 31.2, E = 7.8e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++++++++H s++ ++a +p   +++ +gS+ g+ik+W    
    KIAA0856  2133    RQLIhTFqAHDSAIKALALDPY-EEYFTTGSAEGNIKVWR    2171 

PF00400.22.ls: domain 5 of 6, from 2133 to 2171: score 33.2, E = 8.3e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++++++++H s++ ++a +p   +++ +gS+ g+ik+W    
    KIAA0856  2133    RQLIhTFqAHDSAIKALALDPY-EEYFTTGSAEGNIKVWR    2171 

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