# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bf00171.fasta.huge -Q ../query/KIAA0856.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0856, 2237 aa vs ./tmplib.23663 library 1985268 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.7532+/-0.00582; mu= 15.9774+/- 0.397 mean_var=120.7514+/-27.763, 0's: 0 Z-trim: 5 B-trim: 9 in 1/39 Lambda= 0.116715 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 43, opt: 31, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0893 ( 974 res) hk08702 ( 974) 179 42.7 0.00063 KIAA1942 ( 445 res) fg00781 ( 445) 157 38.6 0.0049 >>KIAA0893 ( 974 res) hk08702 (974 aa) initn: 190 init1: 123 opt: 179 Z-score: 162.3 bits: 42.7 E(): 0.00063 Smith-Waterman score: 181; 23.729% identity (53.559% similar) in 295 aa overlap (1903-2174:642-928) 1880 1890 1900 1910 1920 KIAA08 NCNEIVLASTHDVQELDVTSLLACQSYIWIGEEYDRESKSSDDV----DYRGSTTTLYQP ::: :. .:. . : .. .. ..: KIAA08 ESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVCINILEDTQAVRAVAFHP 620 630 640 650 660 670 1930 1940 1950 1960 1970 KIAA08 SATSY---SASQVHPPSSLPWL---GTGQTSTGASVLMKRNLHN---VKRMTSHPVHQYY .. : : :.. . : . .. .: : .::: :. . .. : : KIAA08 AGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKHHKGSIYCVAWSPCGQLL 680 690 700 710 720 730 1980 1990 2000 2010 2020 2030 KIAA08 LTGAQDGSVRMFEW-------TRPQQLVCFRQAGNARVTRLYFNSQ-GNKCGVADGEGFL ::..: :... . : :. : . :. : .. . . :. .. : : KIAA08 ATGSNDKYVKVLPFNAETCNATGPD-LEFSMHDGTIRDLAFMEGPESGGAILISAGAGDC 740 750 760 770 780 790 2040 2050 2060 2070 2080 2090 KIAA08 SIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNRNVCLWDTLISPGN .:. .. .. .: :. .:. : :. . .:: :.: ..: .:: . :. KIAA08 NIYTTDCQRGQGLHALS--GHTGHI--LALYTWSGWMIASG-SQD-KTVRFWDLRV-PSC 800 810 820 830 840 2100 2110 2120 2130 2140 KIAA08 SLIHGFTCHDHGATVLQYA--PKQQLLISGGRKGHVCIFDIRQRQLIHTFQAHDSAIKAL . : : : :..: . : :. .:: .: . . ..::: ....... :.: .... KIAA08 VRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSV 850 860 870 880 890 900 2150 2160 2170 2180 2190 2200 KIAA08 ALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSEHAKQSIFRNIGAGVMQIDIIQGNRL ..: .:. ::: . .::: : : KIAA08 RFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQDLSFLSSSA 910 920 930 940 950 960 >>KIAA1942 ( 445 res) fg00781 (445 aa) initn: 89 init1: 89 opt: 157 Z-score: 146.4 bits: 38.6 E(): 0.0049 Smith-Waterman score: 164; 22.917% identity (59.722% similar) in 144 aa overlap (2034-2172:249-382) 2010 2020 2030 2040 2050 2060 KIAA08 QAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFIT :.:.: .:... :.... :. . KIAA19 LDWSPRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQ-----RPFVG---HTRSVEDLQWSP 220 230 240 250 260 270 2070 2080 2090 2100 2110 2120 KIAA08 SSSLVATSGHSNDNRNVCLWDTLISPGNS-LIHGFTCHDHGATVLQYAPKQQLLISGGRK . . : .: . . .. .:: .:... .. : :: ..:.... .. .:.::: KIAA19 TENTVFAS--CSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRQEPFLLSGGDD 280 290 300 310 320 2130 2140 2150 2160 2170 KIAA08 GHVCIFDIRQRQL---IHTFQAHDSAIKALALDPYEE-YFTTGSAEGNIKVWRLTGHGLI : . :.:.:: . . ::. : . . .. : . :....:. .: : : KIAA19 GALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVERDP 330 340 350 360 370 380 2180 2190 2200 2210 2220 2230 KIAA08 HSFKSEHAKQSIFRNIGAGVMQIDIIQGNRLFSCGADGTLKTRVLPNAFNIPNRILDIL KIAA19 EAGDVEADPGLADLPQQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTIFRTISV 390 400 410 420 430 440 2237 residues in 1 query sequences 1985268 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:54 2008 done: Thu Dec 18 15:18:55 2008 Total Scan time: 1.070 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]