hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14581465/chunk_1/iprscan-20080502-14581465.nocrc
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Query sequence: KIAA0854
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00389                                                 157.6    1.2e-42   4
SM00355                                                  41.2    1.4e-07   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/2     109   132 ..     1    23 []    24.0     0.02
SM00355      2/2     141   164 ..     1    23 []    17.2      2.3
SM00389      1/4     294   355 ..     1    63 []    20.6    0.003
SM00389      2/4     470   532 ..     1    63 []    46.0  4.8e-09
SM00389      3/4     561   622 ..     1    63 []    40.4  2.4e-07
SM00389      4/4     659   721 ..     1    63 []    50.5  2.1e-10

Alignments of top-scoring domains:
SM00355: domain 1 of 2, from 109 to 132: score 24.0, E = 0.02
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C++s+ + +++++H+  +H   
    KIAA0854   109    YECKY-CPYSTQNLnEFTEHVDmQH    132  

SM00355: domain 2 of 2, from 141 to 164: score 17.2, E = 2.3
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C + C+++++ +++L  H  + H   
    KIAA0854   141    YVCAE-CNFTTKKYdSLSDHNSkFH    164  

SM00389: domain 1 of 4, from 294 to 355: score 20.6, E = 0.003
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  k  s   +  +++ ++F+k pYP+ +e+  L +  + +e+ +++
    KIAA0854   294    NTTKYNS-ALDTNATMINSFNKFPYPTQAELSWLTAASKHPEEHIRI 339  

                   WFQNRRakwkrqekkk<-*
                   WF  +R k+  ++ ++   
    KIAA0854   340 WFATQRLKHGISWSPE    355  

SM00389: domain 2 of 4, from 470 to 532: score 46.0, E = 4.8e-09
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      ++ +    t+eQ++ L+++F ++++P+ +e  +L + +gL ++ +k 
    KIAA0854   470    TPASDRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 516  

                   WFQNRRakwkrqekkk<-*
                   WF+ +R+++ r   +    
    KIAA0854   517 WFSDHRYRCQRGIVHI    532  

SM00389: domain 3 of 4, from 561 to 622: score 40.4, E = 2.4e-07
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +++ +   t+ Q+++LE++F k+ +P+ +e+++L  e++L++r +  
    KIAA0854   561    PQKFKE-KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDS 606  

                   WFQNRRakwkrqekkk<-*
                   WF+ RR+    +e++    
    KIAA0854   607 WFSERRKLRDSMEQAV    622  

SM00389: domain 4 of 4, from 659 to 721: score 50.5, E = 2.1e-10
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      ++ +  + ++eQ++ L+  F+++++P+++e ++LA+++gL ++ +  
    KIAA0854   659    SPSPAIAKSQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVR 705  

                   WFQNRRakwkrqekkk<-*
                   WF+  R+ +k    k+   
    KIAA0854   706 WFKENRCLLKTGTVKW    721  

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