hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14581465/chunk_1/iprscan-20080502-14581465.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0854
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.fs Homeobox domain                                 48.6      2e-11   3
PF00046.19.ls Homeobox domain                                 32.4    1.5e-06   3
PF00096.16.ls Zinc finger, C2H2 type                          30.8    4.6e-06   2
PF00096.16.fs Zinc finger, C2H2 type                          26.8      2e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.ls   1/3     474   527 ..     1    57 []    18.6  5.3e-05
PF00046.19.fs   1/3     478   527 ..     8    57 .]    20.1  0.00043
PF00046.19.ls   2/3     563   616 ..     1    57 []     7.0  0.00084
PF00046.19.ls   3/3     660   716 ..     1    57 []     6.8  0.00091

Alignments of top-scoring domains:
PF00046.19.ls: domain 1 of 3, from 474 to 527: score 18.6, E = 5.3e-05
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                       rk    t+eQ+  L++ F +++ P+ +e  +L + +gL  + +k W
    KIAA0854   474    DRKK---TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKW 517  

                   FQNRRaKwKk<-*
                   F  +R+++ +   
    KIAA0854   518 FSDHRYRCQR    527  

PF00046.19.fs: domain 1 of 3, from 478 to 527: score 20.1, E = 0.00043
                   *->tpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvWFQNRRaK
                      t+eQ+  L++ F +++ P+ +e  +L + +gL  + +k WF  +R++
    KIAA0854   478    TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 524  

                   wKk<-*
                   + +   
    KIAA0854   525 CQR    527  

PF00046.19.ls: domain 2 of 3, from 563 to 616: score 7.0, E = 0.00084
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      + k    t+ Q+++LE  F k++ P+ +e  +L  +++L+ r +  W
    KIAA0854   563    KFKE--KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSW 607  

                   FQNRRaKwKk<-*
                   F  RR K +    
    KIAA0854   608 FSERR-KLRD    616  

PF00046.19.ls: domain 3 of 3, from 660 to 716: score 6.8, E = 0.00091
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                        +  + ++eQ+  L   F++++ P+++e  +LA+k+gL  + +  W
    KIAA0854   660    PSPAIAKSQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRW 706  

                   FQNRRaKwKk<-*
                   F   R   K    
    KIAA0854   707 FKENRCLLKT    716  

//