hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14444060/chunk_1/iprscan-20080502-14444060.nocrc
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Query sequence: KIAA0846
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00147                                                 367.8   6.8e-106   1
SM00109                                                  72.0    7.3e-17   1
SM00229                                                  64.4    1.5e-14   1
SM00054                                                  33.0      4e-05   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00229     1/1       4   127 ..     1   172 []    64.4  1.5e-14
SM00147     1/1     150   386 ..     1   261 []   367.8 6.8e-106
SM00054     1/2     425   453 ..     1    29 []    21.2     0.14
SM00054     2/2     454   482 ..     1    29 []    11.8      5.4
SM00109     1/1     496   545 ..     1    61 []    72.0  7.3e-17

Alignments of top-scoring domains:
SM00229: domain 1 of 1, from 4 to 127: score 64.4, E = 1.5e-14
                   *->ckggliKgGtlekLiehLteardk.gkvdlkaDptfv.etFLlTYRs
                       ++gl K++tl+ L+  ++e +d++g      D+++++++ Ll++R+
    KIAA0846     4    GSSGLGKAATLDELLCTCIEMFDDnGE----LDNSYLpRIVLLMHRW 46   

                   FittqeLlqkLldrYnaippeivsrSlelkateaseglsfedysknaipv
                   + +++eL +kLl  Y+ +  e                             
    KIAA0846    47 YLSSTELAEKLLCMYRNATGE----------------------------- 67   

                   gfaetdiivkekvnprriqnrVlnilrlWvenywedFeedpklnlfLeel
                             ++ ++   ++++++++r+W+ +++ +F +d+ l+++ ee 
    KIAA0846    68 ----------SCNEF---RLKICYFMRYWILKFPAEFNLDLGLIRMTEE- 103  

                   flelvedkkdkgpglekslanilerls<-*
                   f e++ +    g +++ sl++i  + s   
    KIAA0846   104 FREVASQL---GYEKHVSLIDISSIPS    127  

SM00147: domain 1 of 1, from 150 to 386: score 367.8, E = 6.8e-106
                   *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap
                      +++l+p elAe+LT+l++++Fr+I++++++++v++++ +++p     
    KIAA0846   150    FDHLEPIELAEHLTFLEHKSFRRISFTDYQSYVIHGCLENNP----- 191  

                   qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn
                    +le++i++fN +s wV+ ++l+++t  p++Raev++kFI+VAk++++L+
    KIAA0846   192 -TLERSIALFNGISKWVQLMVLSKPT--PQQRAEVITKFINVAKKLLQLK 238  

                   NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk
                   NFn+lmA+v++Ls+s+IsRLk+T+++lss+ +k++ e++el++++ +N++
    KIAA0846   239 NFNTLMAVVGGLSHSSISRLKETHSHLSSEVTKNWNEMTELVSSN-GNYC 287  

                   nYReaLkscnkspnvqppcvPflGvyLkDLtfidegnpdflengtkglvN
                   nYR+a++ c       ++++P+lGv+LkDL++++  +pd++e+   ++vN
    KIAA0846   288 NYRKAFADCD------GFKIPILGVHLKDLIAVHVIFPDWTEE---NKVN 328  

                   FeKrrkiakilreirqlqsacqpynlkpnrndiqellrasrplevlpeee
                     K+++++ +l+e+  lq+  ++++l+pn +d+++ll+ s  l+ +++e+
    KIAA0846   329 IVKMHQLSVTLSELVSLQN--ASHHLEPN-MDLINLLTLS--LDLYHTED 373  

                   delyelSlriEPrv<-*
                    ++y+lSl +EPr+   
    KIAA0846   374 -DIYKLSLVLEPRN    386  

SM00054: domain 1 of 2, from 425 to 453: score 21.2, E = 0.14
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       ++ +Fr +D D+dG+I+ e+f  + +++   
    KIAA0846   425    LVESVFRNYDHDHDGYISQEDFESIAANF    453  

SM00054: domain 2 of 2, from 454 to 482: score 11.8, E = 5.4
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       + + F ++DkD dG I+++E++a + +    
    KIAA0846   454    PFLDSFCVLDKDQDGLISKDEMMAYFLRA    482  

SM00109: domain 1 of 1, from 496 to 545: score 72.0, E = 7.3e-17
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f++ t+ kptfC++C  ++wg+ kq     g++C +C+ +cHk+C
    KIAA0846   496    HNFQEMTYlKPTFCEHCAGFLWGIIKQ-----GYKCKDCGANCHKQC 537  

                   aekvpaqshksglsC<-*
                   ++ + +       +C   
    KIAA0846   538 KDLLVL-------AC    545  

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