# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05227.fasta.huge -Q ../query/KIAA0844.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0844, 438 aa
 vs ./tmplib.23663 library

1987067 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.9367+/-0.00661; mu= 10.8221+/- 0.449
 mean_var=172.6236+/-41.910, 0's: 0 Z-trim: 4  B-trim: 5 in 1/39
 Lambda= 0.097617

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1940  ( 821 res)   ah04227                     ( 821)  350 61.4 2.3e-10


>>KIAA1940  ( 821 res)   ah04227                          (821 aa)
 initn: 304 init1: 304 opt: 350  Z-score: 277.8  bits: 61.4 E(): 2.3e-10
Smith-Waterman score: 350;  39.474% identity (75.000% similar) in 152 aa overlap (178-329:147-298)

       150       160       170       180       190       200       
KIAA08 VVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTI
                                     ::     .:  . .: ....:. : :.. :
KIAA19 PPPGPGPGPCPGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKI
        120       130       140       150       160       170      

       210       220       230       240       250       260       
KIAA08 EKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRL
         .. .:  :: .:.:::  .:   ..: ..:.:...:   :.:::::.::..: :.: :
KIAA19 AGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDL
        180       190       200       210       220       230      

       270       280       290       300       310       320       
KIAA08 TESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQ
       ...:.:: ::..::: ...::. .: .:...: :::.:::.::.:.. ::.::.  .:. 
KIAA19 VHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSC
        240       250       260       270       280       290      

       330       340       350       360       370       380       
KIAA08 ASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKSHFHPKGRNHLKKAKDDRAS
       .:                                                          
KIAA19 GSTPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNTYAVSRHGSSPSTGASSRVPAA
        300       310       320       330       340       350      




438 residues in 1 query   sequences
1987067 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:26 2008 done: Thu Dec 18 15:18:26 2008
 Total Scan time:  0.420 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]