hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14393498/chunk_1/iprscan-20080502-14393498.nocrc
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Query sequence: KIAA0843
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.ls LIM domain                                     190.9    2.8e-54   4
PF00412.12.fs LIM domain                                     186.4    2.7e-53   4
PF02209.10.fs Villin headpiece domain                         80.7    5.1e-26   1
PF02209.10.ls Villin headpiece domain                         82.7      1e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.fs   1/4      31    87 ..     1    61 []    37.1    4e-10
PF00412.12.ls   1/4      31    87 ..     1    61 []    39.1  1.4e-08
PF00412.12.ls   2/4      90   146 ..     1    61 []    45.3  1.9e-10
PF00412.12.fs   2/4      90   146 ..     1    61 []    43.4  6.3e-12
PF00412.12.ls   3/4     159   215 ..     1    61 []    78.7  1.7e-20
PF00412.12.fs   3/4     159   215 ..     1    61 []    76.8  1.4e-21
PF00412.12.fs   4/4     218   260 ..     1    45 [.    29.1  8.2e-08
PF00412.12.ls   4/4     218   275 ..     1    61 []    27.8  2.8e-06
PF02209.10.fs   1/1     656   691 .]     1    36 []    80.7  5.1e-26
PF02209.10.ls   1/1     656   691 .]     1    36 []    82.7    1e-21

Alignments of top-scoring domains:
PF00412.12.fs: domain 1 of 4, from 31 to 87: score 37.1, E = 4e-10
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C++Cg++    e+v r+ ++++H+ CF+C vCg+ L+ ++ ff+k+ 
    KIAA0843    31    CYRCGDTCK-GEVV-RVHNNHFHIRCFTCQVCGCGLAQSG-FFFKNQ 74   

                   sklYCkhDyyklfg<-*
                    +  C +Dy++l+g   
    KIAA0843    75 -EYICTQDYQQLYG    87   

PF00412.12.ls: domain 1 of 4, from 31 to 87: score 39.1, E = 1.4e-08
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C++Cg++    e+v r+ ++++H+ CF+C vCg+ L+ ++ ff+k+ 
    KIAA0843    31    CYRCGDTCK-GEVV-RVHNNHFHIRCFTCQVCGCGLAQSG-FFFKNQ 74   

                   sklYCkhDyyklfg<-*
                    +  C +Dy++l+g   
    KIAA0843    75 -EYICTQDYQQLYG    87   

PF00412.12.ls: domain 2 of 4, from 90 to 146: score 45.3, E = 1.9e-10
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C +C + I++++++  Al++ +Hp+CF+C+ C+kp+  gd + +  +
    KIAA0843    90    CDSCRDFITGEVIS--ALGRTYHPKCFVCSLCRKPFPIGDKVTFSGK 134  

                   sklYCkhDyyklfg<-*
                    + +C+  + + ++   
    KIAA0843   135 -ECVCQT-CSQSMA    146  

PF00412.12.fs: domain 2 of 4, from 90 to 146: score 43.4, E = 6.3e-12
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C +C + I++++++  Al++ +Hp+CF+C+ C+kp+  gd + +  +
    KIAA0843    90    CDSCRDFITGEVIS--ALGRTYHPKCFVCSLCRKPFPIGDKVTFSGK 134  

                   sklYCkhDyyklfg<-*
                    + +C+  + + ++   
    KIAA0843   135 -ECVCQT-CSQSMA    146  

PF00412.12.ls: domain 3 of 4, from 159 to 215: score 78.7, E = 1.7e-20
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC++ I + + +  Aldk wH++CF+C +C+  L+    + +kdg
    KIAA0843   159    CAGCKEEIKHGQSLL-ALDKQWHVSCFKCQTCSVILTGE--YISKDG 202  

                   sklYCkhDyyklfg<-*
                     +YC++Dy+++fg   
    KIAA0843   203 -VPYCESDYHAQFG    215  

PF00412.12.fs: domain 3 of 4, from 159 to 215: score 76.8, E = 1.4e-21
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC++ I + + +  Aldk wH++CF+C +C+  L+    + +kdg
    KIAA0843   159    CAGCKEEIKHGQSLL-ALDKQWHVSCFKCQTCSVILTGE--YISKDG 202  

                   sklYCkhDyyklfg<-*
                     +YC++Dy+++fg   
    KIAA0843   203 -VPYCESDYHAQFG    215  

PF00412.12.fs: domain 4 of 4, from 218 to 260: score 29.1, E = 8.2e-08
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffek<-
                      C  C++ I++r+l   A++k++Hp C rC  C++ ++eg e +++  
    KIAA0843   218    CETCDRYISGRVLE--AGGKHYHPTCARCVRCHQMFTEGEEMYLT   260  

                   *
                    
    KIAA0843     -   -    

PF00412.12.ls: domain 4 of 4, from 218 to 275: score 27.8, E = 2.8e-06
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C  C++ I++r+l   A++k++Hp C rC  C++ ++eg e +++  
    KIAA0843   218    CETCDRYISGRVLE--AGGKHYHPTCARCVRCHQMFTEGEEMYLTGS 262  

                   sk...lYCkhDyyklfg<-*
                    +  ++ Ck+   ++++   
    KIAA0843   263 -EvwhPICKQ---AARA    275  

PF02209.10.fs: domain 1 of 1, from 656 to 691: score 80.7, E = 5.1e-26
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +Ls+e+F++vFgMt++EF++L+lWK+n+LKK+++LF   
    KIAA0843   656    HLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF    691  

PF02209.10.ls: domain 1 of 1, from 656 to 691: score 82.7, E = 1e-21
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +Ls+e+F++vFgMt++EF++L+lWK+n+LKK+++LF   
    KIAA0843   656    HLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF    691  

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