# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj06536.fasta.huge -Q ../query/KIAA0837.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0837, 745 aa
 vs ./tmplib.23663 library

1986760 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.8785+/-0.00458; mu= 21.8215+/- 0.312
 mean_var=76.8865+/-18.051, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.146268

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0631  ( 729 res)   hh01881s1                   ( 729)  565 129.1 1.5e-30


>>KIAA0631  ( 729 res)   hh01881s1                        (729 aa)
 initn: 485 init1: 221 opt: 565  Z-score: 640.3  bits: 129.1 E(): 1.5e-30
Smith-Waterman score: 622;  26.324% identity (55.673% similar) in 661 aa overlap (116-741:93-724)

          90       100       110       120       130       140     
KIAA08 AILAYWFTHRPKALQPPCNLLMQSEEVEDSGGARRSVIGSGPQLLTHYYDDARTMYQVFR
                                     : .:  .  : :::         :....: 
KIAA06 NHALELSVPEKVNNAQWDAPEEALWTTRADGRVRLRIDPSCPQL-------PYTVHRMFY
             70        80        90       100              110     

         150       160       170       180       190       200     
KIAA08 RGLSISGNGPCLGFRKPKQPYQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNR
       ..:.  :.   :::.. .. .. .::..    :.  ..:.:. . :   .  ..... : 
KIAA06 EALDKYGDLIALGFKR-QDKWEHISYSQYYLLARRAAKGFLKLGLKQAHS--VAILGFNS
         120       130        140       150       160         170  

         210       220       230       240       250       260     
KIAA08 PEWIIVELACYTYSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVER--
       :::..  ..    . .:. .: : .: : .::      ....::  ..    ::.. .  
KIAA06 PEWFFSAVGTVFAGGIVTGIYTTSSPEACQYIAYDCCANVIMVDTQKQ----LEKILKIW
            180       190       200       210       220            

           270       280       290       300       310        320  
KIAA08 KETPGLKLIILMDPFEEALKERGQKCGVVIKSMQAVEDCGQENHQAPVPPQ-PDDLSIVC
       :. : :: ...   ..:   ..  .  .. . :.  ..  .:  .: .  : :..  .. 
KIAA06 KQLPHLKAVVI---YKEPPPNKMANVYTMEEFMELGNEVPEEALDAIIDTQQPNQCCVLV
      230          240       250       260       270       280     

            330       340       350         360       370       380
KIAA08 FTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPR--QDDVLISFLPLAHMFERVIQS
       .::::::::::.::.. :..  ...        : :   :..:..:.:::.:.  .. . 
KIAA06 YTSGTTGNPKGVMLSQDNIT--WTARYGSQAGDIRPAEVQQEVVVSYLPLSHIAAQIYDL
         290       300         310       320       330       340   

               390         400       410       420       430       
KIAA08 VVYCH-GGRVGFFQGDIRL--LSDDMKALCPTIFPVVPRLLNRMYDKIFSQANTP--LKR
        .  . :..: : . :     : . .. . ::    :::. ......:   :     ..:
KIAA06 WTGIQWGAQVCFAEPDALKGSLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRR
           350       360       370       380       390       400   

         440         450          460       470         480        
KIAA08 WLLEFAAKR--KQAEVRSGI-IR--NDSIWDELFFNKIQASLG--GCVRMIVTGAAPASP
        .: .: .   .:  .  :  ..  .  . : : . :.. .::   : . .  ::::   
KIAA06 KMLLWAMSVTLEQNLTCPGSDLKPFTTRLADYLVLAKVRQALGFAKCQKNFY-GAAPMMA
           410       420       430       440       450        460  

      490       500       510       520       530       540        
KIAA08 TVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKLVDVEELNYW
        .  :.  .:. ..: ::: .: ..   ...: ..     :  .:  ..:::. .     
KIAA06 ETQHFF-LGLNIRLYAGYGLSETSGPHFMSSPYNYRLYSSGKLVPGCRVKLVNQDA----
             470       480       490       500       510           

      550       560       570       580       590       600        
KIAA08 ACKGEGEICVRGPNVFKGYLKDPDRTKEALDSDGWLHTGDIGKWLPAGTLKIIDRKKHIF
         .: ::::. : ..: :::.  :.: ::.: .::::::: :.    : : :  : :...
KIAA06 --EGIGEICLWGRTIFMGYLNMEDKTCEAIDEEGWLHTGDAGRLDADGFLYITGRLKELI
         520       530       540       550       560       570     

      610       620       630        640       650                 
KIAA08 KLAQGEYVAPEKIENIYIRSQPV-AQIYVHGDSLKAFLVGIVV------PDP--------
         : :: : :  ::.      :. .. .. ::. : ::  ...      ::         
KIAA06 ITAGGENVPPVPIEEAVKMELPIISNAMLIGDQRK-FLSMLLTLKCTLDPDTSDQTDNLT
         580       590       600       610        620       630    

           660        670         680       690       700       710
KIAA08 EVMPSWAQKRGIEGT-YADLCTNKD--LKKAILEDMVRLGKESGLHSFEQVKAIHIHSDM
       :    . :. : ..:  ...  .::  . .:: : . :.. ... . ..  :   .. : 
KIAA06 EQAVEFCQRVGSRATTVSEIIEKKDEAVYQAIEEGIRRVNMNAAARPYHIQKWAILERD-
          640       650       660       670       680       690    

              720       730       740      
KIAA08 FSVQNGLLTPTLKAKRPELREYFKKQIEELYSISM 
       ::...: : ::.: ::  . : .:  :. .:     
KIAA06 FSISGGELGPTMKLKRLTVLEKYKGIIDSFYQEQKM
           700       710       720         




745 residues in 1 query   sequences
1986760 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:11 2008 done: Thu Dec 18 15:18:11 2008
 Total Scan time:  0.570 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]