hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14262543/chunk_1/iprscan-20080502-14262543.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0835 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08474.2.fs Myelin transcription factor 1 549.9 2.5e-162 2 PF08474.2.ls Myelin transcription factor 1 538.0 9.4e-159 1 PF01530.9.ls Zinc finger, C2HC type 471.5 9.8e-139 7 PF01530.9.fs Zinc finger, C2HC type 457.6 1.5e-134 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01530.9.ls 1/7 73 103 .. 1 31 [] 65.6 1.5e-16 PF01530.9.fs 1/7 73 103 .. 1 31 [] 63.6 4.9e-16 PF01530.9.ls 2/7 485 515 .. 1 31 [] 63.9 5e-16 PF01530.9.fs 2/7 485 515 .. 1 31 [] 61.9 1.4e-15 PF01530.9.fs 3/7 529 559 .. 1 31 [] 66.2 9.5e-17 PF01530.9.ls 3/7 529 559 .. 1 31 [] 68.2 2.4e-17 PF08474.2.fs 1/2 606 661 .. 1 56 [. 155.4 2e-44 PF08474.2.ls 1/1 606 820 .. 1 270 [] 538.0 9.4e-159 PF08474.2.fs 2/2 663 820 .. 100 270 .] 394.4 1.5e-115 PF01530.9.ls 4/7 843 873 .. 1 31 [] 71.9 1.9e-18 PF01530.9.fs 4/7 843 873 .. 1 31 [] 69.9 7.5e-18 PF01530.9.ls 5/7 887 917 .. 1 31 [] 72.9 9.3e-19 PF01530.9.fs 5/7 887 917 .. 1 31 [] 70.9 3.7e-18 PF01530.9.ls 6/7 936 966 .. 1 31 [] 67.4 4.1e-17 PF01530.9.fs 6/7 936 966 .. 1 31 [] 65.5 1.6e-16 PF01530.9.ls 7/7 989 1019 .. 1 31 [] 61.6 2.4e-15 PF01530.9.fs 7/7 989 1019 .. 1 31 [] 59.6 5.7e-15 Alignments of top-scoring domains: PF01530.9.ls: domain 1 of 7, from 73 to 103: score 65.6, E = 1.5e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +l+CPtpGC+GsGHv+Gky++Hrsl++CPla KIAA0835 73 DLSCPTPGCTGSGHVRGKYSRHRSLQSCPLA 103 PF01530.9.fs: domain 1 of 7, from 73 to 103: score 63.6, E = 4.9e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +l+CPtpGC+GsGHv+Gky++Hrsl++CPla KIAA0835 73 DLSCPTPGCTGSGHVRGKYSRHRSLQSCPLA 103 PF01530.9.ls: domain 2 of 7, from 485 to 515: score 63.9, E = 5e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e+kCPtpGCdG+GHvtG y +HrslsGCP++ KIAA0835 485 EIKCPTPGCDGTGHVTGLYPHHRSLSGCPHK 515 PF01530.9.fs: domain 2 of 7, from 485 to 515: score 61.9, E = 1.4e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e+kCPtpGCdG+GHvtG y +HrslsGCP++ KIAA0835 485 EIKCPTPGCDGTGHVTGLYPHHRSLSGCPHK 515 PF01530.9.fs: domain 3 of 7, from 529 to 559: score 66.2, E = 9.5e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv++++++HrslsGCP+a KIAA0835 529 VLKCPTPGCTGQGHVNSNRNTHRSLSGCPIA 559 PF01530.9.ls: domain 3 of 7, from 529 to 559: score 68.2, E = 2.4e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv++++++HrslsGCP+a KIAA0835 529 VLKCPTPGCTGQGHVNSNRNTHRSLSGCPIA 559 PF08474.2.fs: domain 1 of 2, from 606 to 661: score 155.4, E = 2e-44 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT YR+nVA++tPRAnlAKElEKFSKv+FdYaSFDaqvFGKR+lAPk+QT KIAA0835 606 YRPNVAPATPRANLAKELEKFSKVTFDYASFDAQVFGKRMLAPKIQT 652 seiSPKayq<-* se+SPKa+q KIAA0835 653 SETSPKAFQ 661 PF08474.2.ls: domain 1 of 1, from 606 to 820: score 538.0, E = 9.4e-159 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT YR+nVA++tPRAnlAKElEKFSKv+FdYaSFDaqvFGKR+lAPk+QT KIAA0835 606 YRPNVAPATPRANLAKELEKFSKVTFDYASFDAQVFGKRMLAPKIQT 652 seiSPKayqdAkpFpKdsSPessssSsYvksssSssSaGGGasasSTvrk se+SPKa+q + KIAA0835 653 SETSPKAFQ----------------------------C------------ 662 SSFDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadiE FDYsqdaEaaHm AAtAILNLSTRC+Emp+nLStKPQdL ++ks+diE KIAA0835 663 --FDYSQDAEAAHM-AATAILNLSTRCWEMPENLSTKPQDL-PSKSVDIE 708 VDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPSS VDENGTLDLSM+K+Rkr++++PssSScss++++ksPd++q++sstsAPSS KIAA0835 709 VDENGTLDLSMHKHRKRENAFPSSSSCSSSPGVKSPDASQRHSSTSAPSS 758 alvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfalee ++++++s+Q +s+qdeWd+P+dYt Kp+rl+EeE++e++P++++fa++e KIAA0835 759 SMTSPQSSQ-ASRQDEWDRPLDYT--KPSRLREEEPEESEPAAHSFASSE 805 leekkfagEvsIPSPKPkyeeRk<-* ++++++++E ++eeRk KIAA0835 806 ADDQEVSEE--------NFEERK 820 PF08474.2.fs: domain 2 of 2, from 663 to 820: score 394.4, E = 1.5e-115 *->FDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadi FDYsqdaEaaHm AAtAILNLSTRC+Emp+nLStKPQdL ++ks+di KIAA0835 663 FDYSQDAEAAHM-AATAILNLSTRCWEMPENLSTKPQDL-PSKSVDI 707 EVDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPS EVDENGTLDLSM+K+Rkr++++PssSScss++++ksPd++q++sstsAPS KIAA0835 708 EVDENGTLDLSMHKHRKRENAFPSSSSCSSSPGVKSPDASQRHSSTSAPS 757 SalvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfale S++++++s+Q +s+qdeWd+P+dYt Kp+rl+EeE++e++P++++fa++ KIAA0835 758 SSMTSPQSSQ-ASRQDEWDRPLDYT--KPSRLREEEPEESEPAAHSFASS 804 eleekkfagEvsIPSPKPkyeeRk<-* e++++++++E ++eeRk KIAA0835 805 EADDQEVSEE--------NFEERK 820 PF01530.9.ls: domain 4 of 7, from 843 to 873: score 71.9, E = 1.9e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +l+CPtpGCdGsGH+tG+y+sHrslsGCPla KIAA0835 843 LLTCPTPGCDGSGHITGNYASHRSLSGCPLA 873 PF01530.9.fs: domain 4 of 7, from 843 to 873: score 69.9, E = 7.5e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +l+CPtpGCdGsGH+tG+y+sHrslsGCPla KIAA0835 843 LLTCPTPGCDGSGHITGNYASHRSLSGCPLA 873 PF01530.9.ls: domain 5 of 7, from 887 to 917: score 72.9, E = 9.3e-19 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGCdGsGH+tG+y+sHrslsGCP+a KIAA0835 887 DLKCPTPGCDGSGHITGNYASHRSLSGCPRA 917 PF01530.9.fs: domain 5 of 7, from 887 to 917: score 70.9, E = 3.7e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGCdGsGH+tG+y+sHrslsGCP+a KIAA0835 887 DLKCPTPGCDGSGHITGNYASHRSLSGCPRA 917 PF01530.9.ls: domain 6 of 7, from 936 to 966: score 67.4, E = 4.1e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++kCP+pGC G+GH++Gky+sHrs+sGCPla KIAA0835 936 LMKCPVPGCVGLGHISGKYASHRSASGCPLA 966 PF01530.9.fs: domain 6 of 7, from 936 to 966: score 65.5, E = 1.6e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++kCP+pGC G+GH++Gky+sHrs+sGCPla KIAA0835 936 LMKCPVPGCVGLGHISGKYASHRSASGCPLA 966 PF01530.9.ls: domain 7 of 7, from 989 to 1019: score 61.6, E = 2.4e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CPtpGCdGsGH +G++ +HrslsGCP+a KIAA0835 989 GPTCPTPGCDGSGHANGSFLTHRSLSGCPRA 1019 PF01530.9.fs: domain 7 of 7, from 989 to 1019: score 59.6, E = 5.7e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CPtpGCdGsGH +G++ +HrslsGCP+a KIAA0835 989 GPTCPTPGCDGSGHANGSFLTHRSLSGCPRA 1019 //