hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14244818/chunk_1/iprscan-20080502-14244818.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0834 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 298.4 5.1e-85 1 SM00219 -27.2 1.9e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 119 403 .. 1 280 [] -27.2 1.9e-09 SM00220 1/1 119 403 .. 1 231 [] 298.4 5.1e-85 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 119 to 403: score -27.2, E = 1.9e-09 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE ++++kLGeG + +VykG+ k ++ VA K+++ ++++ +rE KIAA0834 119 YEKLEKLGEGSYATVYKGKSKvngKLVALKVIRLQEeegtPFTAIRE 165 akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL a+++k l kH NiV L+ ++ ++ e l +v+Ey+ + dL +y KIAA0834 166 ASLLKGL--KHANIVLLHDIIHTK-------ETLTLVFEYV-HTDLCQYM 205 rknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvK k+ + l ++ f +Q +G +Y++++ + HRDL N L+++ + K KIAA0834 206 DKHPGGLHPDNVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELK 255 IsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl.kdgk +DFGL+R+ + +Y+ ++ + + +P +l + KIAA0834 256 LADFGLARAKSVP------SHTYS-----NEV--VTLWYRPPDVLlGSTE 292 FtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpk +++ D W G E+ G pg+ ++ ++ le++ l KIAA0834 293 YSTCLDMWGVGCIFVEMI-QGVAAFPGM----KDIQDQLERI--FLVLGT 335 Pendl.p.iS.........................s.vtCPdelYdlMlq P +d p++ + ++ ++++ + ++++ ++ ++ s v ++l + lq KIAA0834 336 PNEDTwPgVHslphfkperftlyssknlrqawnklSyVNHAEDLASKLLQ 385 CWaedPedRPtFsel..verl<-* C P++R + ++ ++e++ KIAA0834 386 C---SPKNRLSAQAAlsHEYF 403 SM00220: domain 1 of 1, from 119 to 403: score 298.4, E = 5.1e-85 *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE Ye+l+klG+G++++Vy+++ k g+lvA+Kvi+ +++++++ +++rE KIAA0834 119 YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRlqeeegtpFTAIRE 165 ikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrg ++Lk +H NIV L+d++++++ l lV+Ey+ + dL ++++k++++ KIAA0834 166 ASLLKGlKHANIVLLHDIIHTkETLTLVFEYVHT---DLCQYMDKHPGG- 211 lrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKla l+++ ++ ++ Q+l++L Y+H++ I+HRDLKP+N+L+++++++Kla KIAA0834 212 ----LHPdNVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDtgELKLA 257 DFGlArql.......ttfvGTpeYmAPEvl....gYgkpavDiWSlGcil DFGlAr + ++++ + v+T++Y++P vl +++ Y++ D+W +Gci+ KIAA0834 258 DFGLARAKsvpshtySNEVVTLWYRPPDVLlgstEYST-CLDMWGVGCIF 306 yElltGkpPFp.......qldlifkkig...................... E++ G Fp+ ++ ++ql++if ++g+++++++++ ++ ++ ++++ + KIAA0834 307 VEMIQGVAAFPgmkdiqdQLERIFLVLGtpnedtwpgvhslphfkperft 356 ................SpeakdLikklLvkdPekRlta.eaLedeldika +++++ + +++ ++ a dL +klL+ P++Rl+a+ aL KIAA0834 357 lyssknlrqawnklsyVNHAEDLASKLLQCSPKNRLSAqAALS------- 399 HPff<-* H++f KIAA0834 400 HEYF 403 //