hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14230545/chunk_1/iprscan-20080502-14230545.nocrc
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Query sequence: KIAA0833
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03859.7.ls CG-1 domain                                    307.9    1.7e-89   1
PF03859.7.fs CG-1 domain                                    306.0    3.2e-89   1
PF00612.17.fs IQ calmodulin-binding motif                     44.6      3e-12   4
PF00612.17.ls IQ calmodulin-binding motif                     35.5    1.7e-07   3
PF01833.14.fs IPT/TIG domain                                  22.1    9.3e-06   1
PF00023.20.fs Ankyrin repeat                                  21.3    5.7e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03859.7.ls   1/1     128   244 ..     1   121 []   307.9  1.7e-89
PF03859.7.fs   1/1     128   244 ..     1   121 []   306.0  3.2e-89
PF01833.14.fs   1/1     934  1013 ..     3   104 .]    22.1  9.3e-06
PF00023.20.fs   1/2    1125  1147 ..     1    23 [.    13.6   0.0081
PF00023.20.fs   2/2    1170  1190 ..     1    21 [.     7.7     0.36
PF00612.17.ls   1/3    1609  1629 ..     1    21 []    13.0        1
PF00612.17.ls   2/3    1632  1652 ..     1    21 []    19.2    0.014

Alignments of top-scoring domains:
PF03859.7.ls: domain 1 of 1, from 128 to 244: score 307.9, E = 1.7e-89
                   *->LlkEAqhRWlrpeeivaiLqnfekfeellttsPktRPqsGSLlLFnR
                      L+kE +hRW+++eei+a+L++fek+ee+lttsPktRPq+GS++L+nR
    KIAA0833   128    LPKE-RHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNR 173  

                   KvLkYFRKDGHnWRKKkDGKTirEaHekLKVGsvevLhCYYaHGeanptF
                   K++kY RKDG++W+K+kDGKT+rE+H+kLKV++ve+L+++Y+H++++ptF
    KIAA0833   174 KKVKY-RKDGYCWKKRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTF 222  

                   qRRcYWlLeeelehIVLVHYldVk<-*
                   +RRcYWlL++  ++IVLVHYl+V+   
    KIAA0833   223 HRRCYWLLQN--PDIVLVHYLNVP    244  

PF03859.7.fs: domain 1 of 1, from 128 to 244: score 306.0, E = 3.2e-89
                   *->LlkEAqhRWlrpeeivaiLqnfekfeellttsPktRPqsGSLlLFnR
                      L+kE +hRW+++eei+a+L++fek+ee+lttsPktRPq+GS++L+nR
    KIAA0833   128    LPKE-RHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNR 173  

                   KvLkYFRKDGHnWRKKkDGKTirEaHekLKVGsvevLhCYYaHGeanptF
                   K++kY RKDG++W+K+kDGKT+rE+H+kLKV++ve+L+++Y+H++++ptF
    KIAA0833   174 KKVKY-RKDGYCWKKRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTF 222  

                   qRRcYWlLeeelehIVLVHYldVk<-*
                   +RRcYWlL++  ++IVLVHYl+V+   
    KIAA0833   223 HRRCYWLLQN--PDIVLVHYLNVP    244  

PF01833.14.fs: domain 1 of 1, from 934 to 1013: score 22.1, E = 9.3e-06
                   *->ItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVtfg
                      +t++sP+++  +GG  + itG    +             ++ +++f+
    KIAA0833   934    VTDYSPEWSYPEGGVKVLITGPWQEAS------------NNYSCLFD 968  

                   gtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrsss
                    + vp+ +i+      ++C++P++ +g  +    +v ++++      +s+
    KIAA0833   969 QISVPASLIQPGV---LRCYCPAHDtGLVT---LQVAFNNQI-----ISN 1007 

                   pvtFtY<-*
                   +v F+Y   
    KIAA0833  1008 SVVFEY    1013 

PF00023.20.fs: domain 1 of 2, from 1125 to 1147: score 13.6, E = 0.0081
                   *->dGfTPLHlAalrgnlevvklLls<-*
                       G+T LHlAa  g++ +++ L++   
    KIAA0833  1125    RGMTLLHLAAAQGYATLIQTLIK    1147 

PF00023.20.fs: domain 2 of 2, from 1170 to 1190: score 7.7, E = 0.36
                   *->dGfTPLHlAalrgnlevvklL<-*
                        +TPL++A+  g+le +  L   
    KIAA0833  1170    FSCTPLMWACALGHLEAAVVL    1190 

PF00612.17.ls: domain 1 of 3, from 1609 to 1629: score 13.0, E = 1
                   *->rraaikIQaawRGylaRkryk<-*
                      + aa +IQ+++R y++   yk   
    KIAA0833  1609    EVAAAVIQRCYRKYKQYALYK    1629 

PF00612.17.ls: domain 2 of 3, from 1632 to 1652: score 19.2, E = 0.014
                   *->rraaikIQaawRGylaRkryk<-*
                      ++aai+IQ+ +R y   k+++   
    KIAA0833  1632    TQAAILIQSKFRSYYEQKKFQ    1652 

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