hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14212268/chunk_1/iprscan-20080502-14212268.nocrc
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Query sequence: KIAA0832
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00104.20.fs Ligand-binding domain of nuclear hormon   200.9    8.9e-60   1
PF00104.20.ls Ligand-binding domain of nuclear hormon   202.8    7.3e-58   1
PF00105.9.fs  Zinc finger, C4 type (two domains)        177.8      1e-52   1
PF00105.9.ls  Zinc finger, C4 type (two domains)        179.8    6.2e-51   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00105.9.fs    1/1     137   212 ..     1    77 []   177.8    1e-52
PF00105.9.ls    1/1     137   212 ..     1    77 []   179.8  6.2e-51
PF00104.20.fs   1/1     284   464 ..     1   198 []   200.9  8.9e-60
PF00104.20.ls   1/1     284   464 ..     1   198 []   202.8  7.3e-58

Alignments of top-scoring domains:
PF00105.9.fs: domain 1 of 1, from 137 to 212: score 177.8, E = 1e-52
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                      +lC+VCGD ASGyHYGv +CE CK+FF+R+iq+n++ YsC++ ++C+
    KIAA0832   137    RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIE-YSCPATNECE 182  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   I+Kr+R+ CQ+CR+ KCL VGM ke+Vr +   
    KIAA0832   183 ITKRRRKSCQACRFMKCLKVGMLKEGVRLD    212  

PF00105.9.ls: domain 1 of 1, from 137 to 212: score 179.8, E = 6.2e-51
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                      +lC+VCGD ASGyHYGv +CE CK+FF+R+iq+n++ YsC++ ++C+
    KIAA0832   137    RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIE-YSCPATNECE 182  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   I+Kr+R+ CQ+CR+ KCL VGM ke+Vr +   
    KIAA0832   183 ITKRRRKSCQACRFMKCLKVGMLKEGVRLD    212  

PF00104.20.fs: domain 1 of 1, from 284 to 464: score 200.9, E = 8.9e-60
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      drel++i+ waK++PgFs Lsl+DQ++LL+s+w+e+l+L+++yrs +
    KIAA0832   284    DRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLS 330  

                   ek.elllfpdggdifeeqlr.ggl.elvrilqelv.plreLkldeeEyal
                   +++el+ + d+  + e+q++  gl +l+ ++++lv++ +++kl +eE++ 
    KIAA0832   331 FEdELVYADDYIMD-EDQSKlAGLlDLNNAILQLVkKYKSMKLEKEEFVT 379  

                   LkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspqd
                   LkAi L n+d  +   ++ e v+klq+ +++aL++Y   ++        d
    KIAA0832   380 LKAIALANSDSMH--IEDVEAVQKLQDVLHEALQDYEAGQH---ME---D 421  

                   prgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLldv
                   p    R +k+L+ Lp lr++s  k++++++ +kl g+v  p++  +L+  
    KIAA0832   422 P--R-RAGKMLMTLPLLRQTS-TKAVQHFYNIKLEGKV--PMH--KLF-- 461  

                   LfkEi<-*
                     +E+   
    KIAA0832   462 --LEM    464  

PF00104.20.ls: domain 1 of 1, from 284 to 464: score 202.8, E = 7.3e-58
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      drel++i+ waK++PgFs Lsl+DQ++LL+s+w+e+l+L+++yrs +
    KIAA0832   284    DRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLS 330  

                   ek.elllfpdggdifeeqlr.ggl.elvrilqelv.plreLkldeeEyal
                   +++el+ + d+  + e+q++  gl +l+ ++++lv++ +++kl +eE++ 
    KIAA0832   331 FEdELVYADDYIMD-EDQSKlAGLlDLNNAILQLVkKYKSMKLEKEEFVT 379  

                   LkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspqd
                   LkAi L n+d  +   ++ e v+klq+ +++aL++Y   ++        d
    KIAA0832   380 LKAIALANSDSMH--IEDVEAVQKLQDVLHEALQDYEAGQH---ME---D 421  

                   prgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLldv
                   p    R +k+L+ Lp lr++s  k++++++ +kl g+v  p++  +L+  
    KIAA0832   422 P--R-RAGKMLMTLPLLRQTS-TKAVQHFYNIKLEGKV--PMH--KLF-- 461  

                   LfkEi<-*
                     +E+   
    KIAA0832   462 --LEM    464  

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