hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14180502/chunk_1/iprscan-20080502-14180502.nocrc
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Query sequence: KIAA0830
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF01223.13.ls   DNA/RNA non-specific endonuclease       -13.8     0.0023   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF01223.13.ls     1/1      84   289 ..     1   310 []   -13.8   0.0023

Alignments of top-scoring domains:
PF01223.13.ls: domain 1 of 1, from 84 to 289: score -13.8, E = 0.0023
                   *->fyehysvcydrrDtrralwvaehltgaslarargrrwtprgwFkt.g
                        e ++  y+ r  r+++++a +  + + ++a+ r       +++++
    KIAA0830    84    GAERFATLYSTR-DRIPVYSAFRAPRPAPGGAEQR-------WLVeP 122  

                   fygvdvatlytqarqldsfkeDpripaaafratlsdYtgsgfDRGHLapa
                   + + +++ l+++   +++    +++ ++  +a+++dY +s++ RG L p 
    KIAA0830   123 QIDDPNSNLEEAINEAEAITSVNSLGSK--QALNTDYLDSDYQRGQLYP- 169  

                   sdpgwgaadkvstaamdaTFylsNmaPQwqgfNrgndrGWaylEnyvRdl
                          +   s + + aTF l+N aP +q f         +l +   + 
    KIAA0830   170 ------FS--LSSDVQVATFTLTNSAPMTQSFQERW---YVNLHSLMDRA 208  

                   akr...kn.dvyVytGplgvptLpdNGqviyLldneglkLkkesdgkrwr
                   ++ + + ++d+y+ tG+++ +                             
    KIAA0830   209 LTPqcgSGeDLYILTGTVPSDY---------------------------- 230  

                   vkyevigigpnkVaVPthfwKVilvessdgavafltwnvnstgkpalgaf
                      +v ++    VaVP++ w +++++  +g++a++++ +  ++ +  +  
    KIAA0830   231 ---RVKDK----VAVPEFVWLAACCAVPGGGWAMGFVKHTRDSDI--IED 271  

                   llpnanipeatssdgkieenvcvdnlasfwgnfygefktfqVpvdeiErl
                   +     +++++                                       
    KIAA0830   272 V-----MVKDL--------------------------------------- 277  

                   lnlntGlgldffcgvpda<-*
                           l  f+    +   
    KIAA0830   278 ----QK--LLPFNPQLFQ    289  

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