hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14125311/chunk_1/iprscan-20080502-14125311.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0827
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00554.13.fs Rel homology domain (RHD)                      129.0    1.9e-36   1
PF00554.13.ls Rel homology domain (RHD)                      130.7    3.8e-36   1
PF01833.14.fs IPT/TIG domain                                  66.2    1.9e-18   1
PF01833.14.ls IPT/TIG domain                                  68.0    2.9e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00554.13.fs   1/1     359   516 ..     1   199 []   129.0  1.9e-36
PF00554.13.ls   1/1     359   516 ..     1   199 []   130.7  3.8e-36
PF01833.14.fs   1/1     522   618 ..     1   104 []    66.2  1.9e-18
PF01833.14.ls   1/1     522   618 ..     1   104 []    68.0  2.9e-17

Alignments of top-scoring domains:
PF00554.13.fs: domain 1 of 1, from 359 to 516: score 129.0, E = 1.9e-36
                   *->LeIvEQPkQRGmRFRYkCEMGRSaGSIpGmesStrskKTfPtVqicn
                      L+Iv+QP+ + +R+RY +E  +S+GS+++     r++ +fPtV++ +
    KIAA0827   359    LKIVVQPETQ-HRARYLTE--GSRGSVKD-----RTQQGFPTVKLEG 397  

                   YdGpavtirVsLVTkdePhrPHpFYQvHsLVGKessdCkdGkvDvtdvce
                     +p+v ++V+ + + ++++PH FYQ+++++G++ + Ck+  + +t v+e
    KIAA0827   398 HNEPVV-LQVFVGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIE 446  

                   vevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvremnrrelnid
                   v + P ++m++  +++GI++ ++ dve+++                ++ +
    KIAA0827   447 VGLDPSNNMTLAVDCVGILKLRNADVEARIG--------------IAGSK 482  

                   pfneveqealrqikdmDLnvVRLCFqaflepdstGnftlplpPVvSnPIy
                   +++               ++ RL+F++ +    + ++ +++++  S PI 
    KIAA0827   483 KKS---------------TRARLVFRVNI---MRKDGSTLTLQTPSSPIL 514  

                   Dk<-*
                   ++   
    KIAA0827   515 CT    516  

PF00554.13.ls: domain 1 of 1, from 359 to 516: score 130.7, E = 3.8e-36
                   *->LeIvEQPkQRGmRFRYkCEMGRSaGSIpGmesStrskKTfPtVqicn
                      L+Iv+QP+ + +R+RY +E  +S+GS+++     r++ +fPtV++ +
    KIAA0827   359    LKIVVQPETQ-HRARYLTE--GSRGSVKD-----RTQQGFPTVKLEG 397  

                   YdGpavtirVsLVTkdePhrPHpFYQvHsLVGKessdCkdGkvDvtdvce
                     +p+v ++V+ + + ++++PH FYQ+++++G++ + Ck+  + +t v+e
    KIAA0827   398 HNEPVV-LQVFVGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIE 446  

                   vevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvremnrrelnid
                   v + P ++m++  +++GI++ ++ dve+++                ++ +
    KIAA0827   447 VGLDPSNNMTLAVDCVGILKLRNADVEARIG--------------IAGSK 482  

                   pfneveqealrqikdmDLnvVRLCFqaflepdstGnftlplpPVvSnPIy
                   +++               ++ RL+F++ +    + ++ +++++  S PI 
    KIAA0827   483 KKS---------------TRARLVFRVNI---MRKDGSTLTLQTPSSPIL 514  

                   Dk<-*
                   ++   
    KIAA0827   515 CT    516  

PF01833.14.fs: domain 1 of 1, from 522 to 618: score 66.2, E = 1.9e-18
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P I + s +s++++G +e+ + G+n+                ++kV+
    KIAA0827   522    PEILKKSLHSCSVKGEEEVFLIGKNFL--------------KGTKVI 554  

                   fggtpvpCdvisssss..........tqivCktPpva.ggpsppvvtvsv
                   f ++   +d +s+ s+ + + +  +++++ +k+Pp+++++++ p v v +
    KIAA0827   555 FQENV--SDENSWKSEaeidmelfhqNHLIVKVPPYHdQHITLP-VSVGI 601  

                   dgggsgdgrssspvtFtY<-*
                   +++  ++grs   ++FtY   
    KIAA0827   602 YVVT-NAGRSHDVQPFTY    618  

PF01833.14.ls: domain 1 of 1, from 522 to 618: score 68.0, E = 2.9e-17
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P I + s +s++++G +e+ + G+n+                ++kV+
    KIAA0827   522    PEILKKSLHSCSVKGEEEVFLIGKNFL--------------KGTKVI 554  

                   fggtpvpCdvisssss..........tqivCktPpva.ggpsppvvtvsv
                   f ++   +d +s+ s+ + + +  +++++ +k+Pp+++++++ p v v +
    KIAA0827   555 FQENV--SDENSWKSEaeidmelfhqNHLIVKVPPYHdQHITLP-VSVGI 601  

                   dgggsgdgrssspvtFtY<-*
                   +++  ++grs   ++FtY   
    KIAA0827   602 YVVT-NAGRSHDVQPFTY    618  

//