# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh02773.fasta.huge -Q ../query/KIAA0824.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0824, 1644 aa vs ./tmplib.23663 library 1985861 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.8108+/-0.0093; mu= -15.4974+/- 0.628 mean_var=391.4327+/-95.340, 0's: 0 Z-trim: 8 B-trim: 9 in 1/39 Lambda= 0.064825 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1870 ( 832 res) hh05136b ( 832) 481 60.2 2.1e-09 KIAA0536 ( 1028 res) hg03863 (1028) 285 42.0 0.0008 >>KIAA1870 ( 832 res) hh05136b (832 aa) initn: 207 init1: 111 opt: 481 Z-score: 260.8 bits: 60.2 E(): 2.1e-09 Smith-Waterman score: 493; 33.215% identity (51.155% similar) in 563 aa overlap (839-1342:13-534) 810 820 830 840 850 860 KIAA08 DSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPN-KLSP : ::. : .: :: : .: . . .: KIAA18 GGHPGMPGGMGTPGEPGPQGPPGSR-GPPGM--RGAKGRRGP 10 20 30 870 880 890 900 910 KIAA08 R-IDGPPTPASLR-FDGSPGQMGGGG-PLR--FEGPQGQLGG-GCPLRFEGPPGPVGT-- : ::: . : . : :: .: : : . : .:.::. : : . :: :: :: KIAA18 RGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFP-GIPGPSGPPGTKG 40 50 60 70 80 90 920 930 940 950 960 KIAA08 ------PLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPG--GLRFE-GPGGQPVGGLRFEG : .:::: : : . : :: : : :: :.. . :: : : : . : KIAA18 LPGEPGPQGPQGPIGPPGEMGPK--GPPGAVGEPGLPGEAGMKGDLGPLGTP-GEQGLIG 100 110 120 130 140 150 970 980 990 1000 1010 1020 KIAA08 HRGQPVGGLRFEGPHGQPVG--GLRFDNPRGQPVGGLRFEGGHGPSGAA--IRFDGPHGQ .::.: :: :: : :.: ::. : ::.: : .: :: .: . ::: : KIAA18 QRGEP--GL--EGDSG-PMGPDGLKGD--RGDP-GP---DGEHGEKGQEGLMGEDGPPGP 160 170 180 190 200 1030 1040 1050 1060 1070 1080 KIAA08 PG-GGIRFEGPLLQQGVGMRFEGPHGQSVA-GLR-FEGQHNQLG--GNLRFEGPHGQPGV :: :.: :: ..: .: .:.. : : . ..:: ...: :. :: : :: KIAA18 PGVTGVR--GPEGKSGK----QGEKGRTGAKGAKGYQGQLGEMGVPGD---PGPPGTPGP 210 220 230 240 250 1090 1100 1110 1120 1130 KIAA08 -GIRFEGPLVQQG--GGMRFEG-PSVPG--GGLRIEGPLGQGGPRFE-GCHAL--RFDGQ : : : : : : : .: :.. : : : :::: ::. : : .. . .: KIAA18 KGSR--GSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGP 260 270 280 290 300 310 1140 1150 1160 1170 1180 KIAA08 PGQPSLL-PRFD-GLHGQPG-PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQH :: :. : : : .:.:: : . ::: : : . : :::: :: : :. . ::. KIAA18 PGPPGDRGPVGDRGDRGEPGDPGY---PGQEGVQGLRGKPGQQGQPGHPG-PRGWPGPKG 320 330 340 350 360 1190 1200 1210 1220 1230 1240 KIAA08 QQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYN--DPPG-NAFNAPS-----QGLQ .... . : : :: . :..: . . :: . : ... .:. .: KIAA18 SKGA--EGPKGKQGKA--GAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQA 370 380 390 400 410 420 1250 1260 1270 1280 1290 KIAA08 FQRHEQIFDSPQGPNFNGPHGP-GNQSFSN-PLNRASGHYFDEKNLQSS-----QFGNFG :. :: :. :: :: : :: . .. : .. . :..: .. . :. : KIAA18 GQQGEQGDDGDPGPM--GPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEG 430 440 450 460 470 480 1300 1310 1320 1330 1340 KIAA08 NIPAPMTVGNIQASQQVLSGVAQPVAF-GQGQQFLPVHPQNP-GF--VQNPSGALPKAYP : . :. .. : : . ..: :.. : : : . :: .:.: : KIAA18 RTGLPGNQGEPGSKGQ--PGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGK 490 500 510 520 530 540 1350 1360 1370 1380 1390 1400 KIAA08 DNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTN KIAA18 EGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDL 550 560 570 580 590 600 >>KIAA0536 ( 1028 res) hg03863 (1028 aa) initn: 118 init1: 118 opt: 285 Z-score: 160.5 bits: 42.0 E(): 0.0008 Smith-Waterman score: 295; 25.160% identity (54.797% similar) in 469 aa overlap (355-790:137-572) 330 340 350 360 370 380 KIAA08 VSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLK-GTN .:: . .. : . : .: .: . :.. KIAA05 ASDKEGMSPAKRTKLDDLALLEDLEKQRALIKAELDNELMEGKVQSGMGLILQGYESGSE 110 120 130 140 150 160 390 400 410 420 430 KIAA08 RDPRLN---RISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKL-NSSKQEKSKSGE .. ... : ...: ...: . .. . . . : ::. .:. . : ..:::.: KIAA05 EEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKGGI 170 180 190 200 210 220 440 450 460 470 480 490 KIAA08 KITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQD .:.:.. . :: ..:::::: : :...: : .: ..: :... :. KIAA05 EIVKEKTTRSKSKERKKSKSPS----KRSKSQD---QARKS--------KSPTLRRRSQE 230 240 250 260 270 500 510 520 530 540 550 KIAA08 KTDGK-----DDDVKEKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESE : :: :: :: . :. ..::. . .: : ::.. : .:. . .. KIAA05 KI-GKARSPTDDKVKIEDKS-KSKDRKKSPIINESR---SRDR---G--KKSRSPVDLRG 280 290 300 310 320 560 570 580 590 600 KIAA08 KQGTKPGRSSTRKRSRSRSPKSRSPII------------HSPKRRDRRSPKRRQRSMSPT :. . .::. :: .::.. : ..:: .::.:: :::::: :.:: KIAA05 KSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRR--SLSPK 330 340 350 360 370 610 620 630 640 650 KIAA08 STPKAGKIRQSGAKQSHMEEFTPPSRE---DRNAK-RSTKQDIRDP-RRMKKTEEERPQE :. . :. .. . .. ::: : :: :: .. :.: :: .. . ::.. KIAA05 PRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRD 380 390 400 410 420 430 660 670 680 690 700 710 KIAA08 TTNQHSTKSGTEPKENVENW----QSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHR-- . : . .. .. : . :.: : .: .: .. ..:. :. : : KIAA05 --DILSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRS-RSPRRRSRSPRRRDRGR 440 450 460 470 480 490 720 730 740 750 760 770 KIAA08 ESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDDF .: : . :. .... : .: . .. :. . : : ..... : . .. ..: KIAA05 RSRSRLRRRSRSRGGRRRRSRSKVKED-KFKGSLSEGMKVEQESSSDDNLEDFDVEEEDE 500 510 520 530 540 550 780 790 800 810 820 830 KIAA08 LVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRL ....: : .: : :.. KIAA05 EALIEQRR--IQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPDDILERVAADV 560 570 580 590 600 610 1644 residues in 1 query sequences 1985861 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:17:41 2008 done: Thu Dec 18 15:17:42 2008 Total Scan time: 0.880 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]