hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14042560/chunk_1/iprscan-20080502-14042560.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0822 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00005.17.fs ABC transporter 303.7 3.2e-88 3 PF00005.17.ls ABC transporter 280.2 3.6e-81 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00005.17.fs 1/3 519 605 .. 1 117 [. 80.6 4.9e-22 PF00005.17.ls 1/2 519 661 .. 1 224 [] 106.3 8.3e-29 PF00005.17.fs 3/3 1286 1464 .. 1 224 [] 172.1 1.3e-48 PF00005.17.ls 2/2 1286 1464 .. 1 224 [] 173.9 3.6e-49 Alignments of top-scoring domains: PF00005.17.fs: domain 1 of 3, from 519 to 605: score 80.6, E = 4.9e-22 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G+++a++G++GaGKSTLL++lsGl Pt +G++++ KIAA0822 519 GQITAILGHSGAGKSTLLNILSGLSV-PT--KGSVTIY--------- 553 RF xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlss.rererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggk ++ls ++e+l k g+++Q + f lTvrenl++++++k + KIAA0822 554 NNKLSEmADLENLSKLTGVCPQSNVQF--DFLTVRENLRLFAKIKGI--- 598 RF xxxxxxxxxxxxxxxxxxxxx ereallrllgleeeadaraee<-* +++++ KIAA0822 599 --------------LPQEVDK 605 PF00005.17.ls: domain 1 of 2, from 519 to 661: score 106.3, E = 8.3e-29 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G+++a++G++GaGKSTLL++lsGl Pt +G++++ KIAA0822 519 GQITAILGHSGAGKSTLLNILSGLSV-PT--KGSVTIY--------- 553 RF xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlss.rererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggk ++ls ++e+l k g+++Q + f lTvrenl++++++k KIAA0822 554 NNKLSEmADLENLSKLTGVCPQSNVQF--DFLTVRENLRLFAKIK----- 596 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx ereallrllgleeeadaraeeaLervGlpd.ladrsnLpqgydtvlgerp G+ ++++d+ KIAA0822 597 --------------------------GILPqEVDK--------------- 605 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gtLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrg ++ lLDEPTagLDp sr q+++ll+e + KIAA0822 606 ---------------------EIFLLDEPTAGLDPFSRHQVWNLLKERKT 634 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx eqgitvllitHdldlldrladrilvlenG<-* + +l+ t+ +d++d ladr + l++G KIAA0822 635 --DRVILFSTQFMDEADILADRKVFLSQG 661 PF00005.17.fs: domain 3 of 3, from 1286 to 1464: score 172.1, E = 1.3e-48 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Gevl+l+G+NGaGKST +k+++G ++ Pt +G++ll g+++ KIAA0822 1286 GEVLGLLGHNGAGKSTSIKVITGDTK-PT--AGQVLLKGSGG----- 1324 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +l+ +gy++Q++ l+ p+lTvr+ l KIAA0822 1325 GDALEF---------LGYCPQENALW--PNLTVRQHL------------- 1350 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg e +++ +gl++++a+ ++ + + + l d +++ +++ KIAA0822 1351 -EVYAAVKGLrKGDAEVAITRLVDALKLQDQLKS-------------PVK 1386 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge tLS G k++++ +l +p ++lLDEP +g Dp++++q+++++r+ ++ KIAA0822 1387 TLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFRN 1436 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* + ++ ll+tH + +++ ++dr++++ G KIAA0822 1437 TERGALLTTHYMAEAEAVCDRVAIMVSG 1464 PF00005.17.ls: domain 2 of 2, from 1286 to 1464: score 173.9, E = 3.6e-49 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Gevl+l+G+NGaGKST +k+++G ++ Pt +G++ll g+++ KIAA0822 1286 GEVLGLLGHNGAGKSTSIKVITGDTK-PT--AGQVLLKGSGG----- 1324 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +l+ +gy++Q++ l+ p+lTvr+ l KIAA0822 1325 GDALEF---------LGYCPQENALW--PNLTVRQHL------------- 1350 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg e +++ +gl++++a+ ++ + + + l d +++ +++ KIAA0822 1351 -EVYAAVKGLrKGDAEVAITRLVDALKLQDQLKS-------------PVK 1386 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge tLS G k++++ +l +p ++lLDEP +g Dp++++q+++++r+ ++ KIAA0822 1387 TLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFRN 1436 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* + ++ ll+tH + +++ ++dr++++ G KIAA0822 1437 TERGALLTTHYMAEAEAVCDRVAIMVSG 1464 //