hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14023677/chunk_1/iprscan-20080502-14023677.nocrc
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Query sequence: KIAA0821
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00284                                                 466.2   1.6e-135   1
SM00303                                                  98.2    9.7e-25   1
SM00008                                                  86.2    3.8e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00284    1/1     234   490 ..     1   349 []   466.2 1.6e-135
SM00008    1/1     568   633 ..     1    89 []    86.2  3.8e-21
SM00303    1/1     890   942 ..     1    51 []    98.2  9.7e-25

Alignments of top-scoring domains:
SM00284: domain 1 of 1, from 234 to 490: score 466.2, E = 1.6e-135
                   *->giLagVskPvllkesekiagksGaWmkDplpnstkTkkrvWvmDgva
                      g L  V +P    ese   ++sGaW+kDpl++     +r++vm++ +
    KIAA0821   234    GTLQKVLEPTSTHESE---HQSGAWCKDPLQAG----DRIYVMPWIP 273  

                   DGrvlrvvrEYssmsdfldgknkikykLphLiKNKLNNTFalsGTGvVVY
                     +++++++EY s  d  + + +++y+Lp           +++GTG+VVY
    KIAA0821   274 --YRTDTLTEYASWEDYVAARHTTTYRLPN----------RVDGTGFVVY 311  

                   nGsLYFnkfeSrsivRyeLeTgvvkkeellpeAgYndrfpYPDHTFEECN
                   +G+ ++nk+++r+iv+y+L+T+++++e  ++ A+Y+d++pY         
    KIAA0821   312 DGAVFYNKERTRNIVKYDLRTRIKSGETVINTANYHDTSPY--------- 352  

                   ATDRHVWLawgghsDiDLaVDEnGLWvIYATEqnaGkIVisKlnPasLev
                           +wgg++DiDLaVDEnGLWvIYATE n+G  V+s+lnP++L+ 
    KIAA0821   353 --------RWGGKTDIDLAVDENGLWVIYATEGNNGRLVVSQLNPYTLRF 394  

                   entWnTeynKrsaanAFiICGvLYvvkSvYEDDDaeslgtkitYaYdTnt
                   e+tW+T y+Krsa+nAF++CGvLYv++SvY DDD e+ g+ ++Ya++Tn+
    KIAA0821   395 EGTWETGYDKRSASNAFMVCGVLYVLRSVYVDDDSEAAGNRVDYAFNTNA 444  

                   PVFSFLSFViNFLGqFLLGYPVFLTEqSLKVEKRqKTEKSRiLRSRENST
                                                                     
    KIAA0821     - -------------------------------------------------- -    

                   LiRPPigkeklldipfeNkYqyismLdYNPlDrkLYawdNghllkYdvkL
                         + e++++  f+N+Yq is++dYNP+D+ LY+w+N+ ++ Y++ +
    KIAA0821   445 ------NREEPVSLTFPNPYQFISSVDYNPRDNQLYVWNNYFVVRYSLEF 488  

                   ee<-*
                   ++   
    KIAA0821   489 GP    490  

SM00008: domain 1 of 1, from 568 to 633: score 86.2, E = 3.8e-21
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                      ++l+C++ + + ++Wp+T++G+lv++pCP++++g+            
    KIAA0821   568    PELFCEPREVRRVQWPATQQGMLVERPCPKGTRGI------------ 602  

                   asRnCtedtGvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                   as +C++ +  G W++ +         p++snCts+++++     
    KIAA0821   603 ASFQCLPAL--GLWNPRG---------PDLSNCTSPWVNQVA    633  

SM00303: domain 1 of 1, from 890 to 942: score 98.2, E = 9.7e-25
                   *->snpiCvfWdese...tgeWstrGCelvetnkpthttCsCnHLTsFAv
                      +n++C+fW++se++ +g+Wst+GC+lve nk thttC C+HLT+FAv
    KIAA0821   890    FNANCSFWNYSErsmLGYWSTQGCRLVESNK-THTTCACSHLTNFAV 935  

                   Lmdvspn<-*
                   Lm+++++   
    KIAA0821   936 LMAHREI    942  

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