hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14004939/chunk_1/iprscan-20080502-14004939.nocrc
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Query sequence: KIAA0820
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00053                                                 618.4   2.4e-181   1
SM00302                                                 123.6    2.2e-32   1
SM00233                                                  52.4    5.7e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00053     1/1      39   278 ..     1   246 []   618.4 2.4e-181
SM00233     1/1     549   656 ..     1    82 []    52.4  5.7e-11
SM00302     1/1     677   768 ..     1    97 []   123.6  2.2e-32

Alignments of top-scoring domains:
SM00053: domain 1 of 1, from 39 to 278: score 618.4, E = 2.4e-181
                   *->mekliplvnklqdafssLGiekdLdLPqIAVvGgQSaGKSSvLEnlv
                      me+liplvn+lqdafs+LG+++ L+LPqIAVvGgQSaGKSSvLEn+v
    KIAA0820    39    MEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFV 85   

                   GkdFLPRGsGIVTRrPLiLkLikiPtstEykeflhykniskklqhfdEvr
                   G+dFLPRGsGIVTRrPL+L+L+   ++ Ey+eflh+k+  kk+++fdEvr
    KIAA0820    86 GRDFLPRGSGIVTRRPLVLQLVT--SKAEYAEFLHCKG--KKFTDFDEVR 131  

                   neIenetDrVtGtnkgISgvlInLrvySPyVlnLTLIDLPGitkVavgdQ
                    eIe+etDrVtG nkgIS ++InLrvySP+VlnLTLIDLPGitkV+vgdQ
    KIAA0820   132 LEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQ 181  

                   PqDIeeQIKklIkkfIskeetliLaVvPaNvDlAnsdALKlAkEVDPkGe
                   P+DIe+QI+++I++fI +e +liLaV+PaN+DlAnsdALKlAkEVDP+G+
    KIAA0820   182 PPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGL 231  

                   RTiGviTKlDLvDeGTdeYardileNkllPLRrGYigVvnRsQkDIegr<
                   RTiGviTKlDL+DeGTd  ard+leNkllPLRrGY+gVvnRsQkDI+g+ 
    KIAA0820   232 RTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYVGVVNRSQKDIDGK  278  

                   -*
                     
    KIAA0820     -    -    

SM00233: domain 1 of 1, from 549 to 656: score 52.4, E = 5.7e-11
                   *->vikeGwLlkks....k.swkkryfvLfngvLlyyksk...kpkgsip
                      vi++GwL++   +  k++ k ++fvL+  +L++yk+++++++k ++p
    KIAA0820   549    VIRKGWLTISNigimKgGSKGYWFVLTAESLSWYKDDeekEKKYMLP 595  

                   Lsgcsvre.p........cFeivt.dr........tlllqAeseeereeW
                   L++++vr+ +++  ++++ F ++++++++  ++ + l+l+++s+e+ ++W
    KIAA0820   596 LDNLKVRDvEksfmsskhIFALFNtEQrnvykdyrFLELACDSQEDVDSW 645  

                   vealqsaiaka<-*
                    ++l +a       
    KIAA0820   646 KASLLRAGVYP    656  

SM00302: domain 1 of 1, from 677 to 768: score 123.6, E = 2.2e-32
                   *->qedseleeIksllkSYfnivrktladqvPkaImhllvneskdslqnF
                      q ++++e+I++l++SY++i+ k ++d +Pk Imhl++n+ kd++++ 
    KIAA0820   677    QLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINS- 722  

                   QellakLykpraeelldeLLeEdpeiaskRkelkkrLelLkkArqiisev
                    ella+Ly    +e+++ L+eE+ e a++R e+ +++ +Lk+A  ii ++
    KIAA0820   723 -ELLAQLYS---SEDQNTLMEESAEQAQRRDEMLRMYQALKEALGIIGDI 768  

                   <-*
                      
    KIAA0820     -     -    

//