hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13573093/chunk_1/iprscan-20080502-13573093.nocrc
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Query sequence: KIAA0818
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00180                                                 175.2    6.2e-48   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00180    1/4      27    71 ..     1    42 []    51.8    9e-11
SM00180    2/4      74   119 ..     1    42 []    49.5  4.4e-10
SM00180    3/4     122   170 ..     1    42 []    29.6  0.00043
SM00180    4/4     173   222 ..     1    42 []    44.3  1.6e-08

Alignments of top-scoring domains:
SM00180: domain 1 of 4, from 27 to 71: score 51.8, E = 9e-11
                   *->CdCnlpppvG.....CdptGqClnCkpnttGGrrCdderCapGyy..
                      CdC+   p+G  + +C+++G C+ Ck +++G   Cd  rC++Gyy+ 
    KIAA0818    27    CDCS---PHGalsipCNSSGKCQ-CKVGVIG-SICD--RCQDGYYgf 66   

                   ...gC<-*
                   +++gC   
    KIAA0818    67 sknGC    71   

SM00180: domain 2 of 4, from 74 to 119: score 49.5, E = 4.4e-10
                   *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy..
                      C+Cn     +++ +Cd  tG ClnC++n  G  +C+  +C++G+y++
    KIAA0818    74    CQCN-----NrsasCDAlTGACLNCQENSKG-NHCE--ECKEGFYqs 112  

                   .....gC<-*
                   ++ +++C   
    KIAA0818   113 pdatkEC    119  

SM00180: domain 3 of 4, from 122 to 170: score 29.6, E = 0.00043
                   *->CdCnlpppvG......Cdp.....tGqClnCkpnttGGrrCdderCa
                      C+C+       +++++C  ++++    C+ Ck++++G ++C+  +C+
    KIAA0818   122    CPCS-----AvtstgsCSIksselEPECDQCKDGYIG-PNCN--KCE 160  

                   pGyy....gC<-*
                   +Gyy+ ++ C   
    KIAA0818   161 NGYYnfdsIC    170  

SM00180: domain 4 of 4, from 173 to 222: score 44.3, E = 1.6e-08
                   *->CdCnlpppvG..........Cdp.tGqClnCkpnttGGrrCdderCa
                      C+C+     G+ ++ ++++ C p++G C+nC +nttG   C+   C+
    KIAA0818   173    CQCH-----GhvdpvktpkiCKPeSGECINCLHNTTG-FWCE--NCL 211  

                   pGyy.....gC<-*
                   +Gy ++ +++C   
    KIAA0818   212 EGYVhdlegNC    222  

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