hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13573093/chunk_1/iprscan-20080502-13573093.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0818
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00053.14.fs Laminin EGF-like (Domains III and V)        195.2    6.1e-56   5
PF00053.14.ls Laminin EGF-like (Domains III and V)        178.7    1.3e-50   4
PF00020.9.fs TNFR/NGFR cysteine-rich region               17.9    0.00018   3

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00053.14.fs   1/5       1    24 [.    33    59 .]    16.5  0.00041
PF00053.14.fs   2/5      27    71 ..     1    59 []    59.4  1.5e-16
PF00053.14.ls   1/4      27    71 ..     1    59 []    61.1  3.3e-15
PF00053.14.fs   3/5      74   119 ..     1    59 []    51.8  2.4e-14
PF00053.14.ls   2/4      74   119 ..     1    59 []    53.5  6.3e-13
PF00053.14.ls   3/4     122   170 ..     1    59 []    16.4  0.00047
PF00053.14.fs   4/5     143   168 ..    27    55 ..    21.8  1.2e-05
PF00053.14.ls   4/4     173   222 ..     1    59 []    47.6  3.8e-11
PF00053.14.fs   5/5     173   222 ..     1    59 []    45.8  1.3e-12

Alignments of top-scoring domains:
PF00053.14.fs: domain 1 of 5, from 1 to 24: score 16.5, E = 0.00041
                   *->pnvtGrrCdrCkpGyyglpsgdpgqgC<-*
                      p+++G +C+ Ck+G+y l+  ++g  C   
    KIAA0818     1    PGYQGLHCETCKEGFY-LNY-TSG-LC    24   

PF00053.14.fs: domain 2 of 5, from 27 to 71: score 59.4, E = 1.5e-16
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      CdC+phG+ls   C+s        +G C+ Ck +v G  CdrC++Gy
    KIAA0818    27    CDCSPHGALS-IPCNS--------SGKCQ-CKVGVIGSICDRCQDGY 63   

                   yglpsgdpgqgC<-*
                   yg+   +   gC   
    KIAA0818    64 YGF---SKN-GC    71   

PF00053.14.ls: domain 1 of 4, from 27 to 71: score 61.1, E = 3.3e-15
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      CdC+phG+ls   C+s        +G C+ Ck +v G  CdrC++Gy
    KIAA0818    27    CDCSPHGALS-IPCNS--------SGKCQ-CKVGVIGSICDRCQDGY 63   

                   yglpsgdpgqgC<-*
                   yg+   +   gC   
    KIAA0818    64 YGF---SKN-GC    71   

PF00053.14.fs: domain 3 of 5, from 74 to 119: score 51.8, E = 2.4e-14
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      C+Cn+++    ++Cd         tG+Cl+C++n  G +C++Ck+G+
    KIAA0818    74    CQCNNRS----ASCDA-------LTGACLNCQENSKGNHCEECKEGF 109  

                   yglpsgdpgqgC<-*
                   y+ p       C   
    KIAA0818   110 YQSPD-ATK-EC    119  

PF00053.14.ls: domain 2 of 4, from 74 to 119: score 53.5, E = 6.3e-13
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      C+Cn+++    ++Cd         tG+Cl+C++n  G +C++Ck+G+
    KIAA0818    74    CQCNNRS----ASCDA-------LTGACLNCQENSKGNHCEECKEGF 109  

                   yglpsgdpgqgC<-*
                   y+ p       C   
    KIAA0818   110 YQSPD-ATK-EC    119  

PF00053.14.ls: domain 3 of 4, from 122 to 170: score 16.4, E = 0.00047
                   *->CdCnphGslsddtCdsddelf.geetGqClkCkpnvtGrrCdrCkpG
                      C C+ + s++  +C       + e   +C+ Ck+++ G++C+ C+ G
    KIAA0818   122    CPCSAVTSTG--SCSI----KsSELEPECDQCKDGYIGPNCNKCENG 162  

                   yyglpsgdpgqgC<-*
                   yy++   d+   C   
    KIAA0818   163 YYNF---DSI--C    170  

PF00053.14.fs: domain 4 of 5, from 143 to 168: score 21.8, E = 1.2e-05
                   *->qClkCkpnvtGrrCdrCkpGyyglpsgdp<-*
                      +C+ Ck+++ G++C+ C+ Gyy++   d+   
    KIAA0818   143    ECDQCKDGYIGPNCNKCENGYYNF---DS    168  

PF00053.14.ls: domain 4 of 4, from 173 to 222: score 47.6, E = 3.8e-11
                   *->CdCnphGslsd..dtCdsddelfgeetGqClkCkpnvtGrrCdrCkp
                      C+C++h ++  ++  C +       e+G+C +C++n+tG +C+ C++
    KIAA0818   173    CQCHGHVDPVKtpKICKP-------ESGECINCLHNTTGFWCENCLE 212  

                   GyyglpsgdpgqgC<-*
                   Gy  +     g +C   
    KIAA0818   213 GYVHD---LEG-NC    222  

PF00053.14.fs: domain 5 of 5, from 173 to 222: score 45.8, E = 1.3e-12
                   *->CdCnphGslsd..dtCdsddelfgeetGqClkCkpnvtGrrCdrCkp
                      C+C++h ++  ++  C +       e+G+C +C++n+tG +C+ C++
    KIAA0818   173    CQCHGHVDPVKtpKICKP-------ESGECINCLHNTTGFWCENCLE 212  

                   GyyglpsgdpgqgC<-*
                   Gy  +     g +C   
    KIAA0818   213 GYVHD---LEG-NC    222  

//