hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13551331/chunk_1/iprscan-20080502-13551331.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0817 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00181 145.4 5.9e-39 13 SM00423 134.6 1e-35 9 SM00180 78.9 6.1e-19 4 SM00042 67.8 1.4e-15 1 SM00179 56.4 3.6e-12 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00042 1/1 40 147 .. 1 144 [] 67.8 1.4e-15 SM00181 1/13 148 177 .. 1 32 [] 11.6 24 SM00181 2/13 180 210 .. 1 32 [] 10.0 33 SM00423 1/9 568 620 .. 1 56 [] 2.3 22 SM00423 2/9 787 839 .. 1 56 [] 15.1 1.2 SM00423 3/9 840 887 .. 1 56 [] 1.9 24 SM00423 4/9 889 931 .. 1 56 [] 23.8 0.023 SM00423 5/9 945 1013 .. 1 56 [] 17.3 0.76 SM00179 1/2 1014 1055 .. 1 34 [] 45.6 6.5e-09 SM00181 3/13 1017 1055 .. 1 32 [] 28.7 0.00079 SM00181 4/13 1057 1100 .. 1 32 [] 22.2 0.074 SM00180 1/4 1103 1148 .. 1 42 [] 16.2 0.41 SM00181 5/13 1110 1149 .. 1 32 [] 2.1 1.6e+02 SM00181 6/13 1150 1200 .. 1 32 [] 5.6 81 SM00180 2/4 1151 1199 .. 1 42 [] 42.3 6.5e-08 SM00181 7/13 1346 1385 .. 1 32 [] 8.6 44 SM00181 8/13 1388 1421 .. 1 32 [] 2.4 1.6e+02 SM00423 6/9 1816 1856 .. 1 56 [] 7.3 7.2 SM00423 7/9 1864 1919 .. 1 56 [] 19.7 0.42 SM00423 8/9 2000 2058 .. 1 56 [] 11.7 2.6 SM00423 9/9 2060 2117 .. 1 56 [] 35.5 7.5e-06 SM00179 2/2 2118 2160 .. 1 34 [] 10.8 0.076 SM00181 9/13 2121 2160 .. 1 32 [] 21.1 0.15 SM00181 10/13 2162 2190 .. 1 32 [] 15.9 5.6 SM00180 3/4 2178 2239 .. 1 42 [] 12.6 0.82 SM00181 11/13 2200 2240 .. 1 32 [] 10.7 29 SM00181 12/13 2241 2304 .. 1 32 [] 3.9 1.1e+02 SM00180 4/4 2244 2317 .. 1 42 [] 7.9 2 SM00181 13/13 2328 2382 .. 1 32 [] 2.4 1.5e+02 Alignments of top-scoring domains: SM00042: domain 1 of 1, from 40 to 147: score 67.8, E = 1.4e-15 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG +l++++ + + + n Y n +C+W+I+ap KIAA0817 40 QRQVLREAPG-------FVTDGAGN------YSVNGNCEWLIEAPSP 73 y.rieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspll ++ri L+F +d+E+ +yDy+ +yDG+s +pll KIAA0817 74 QhRILLDFLF---LDTEC-------------TYDYLFVYDGDS-PRGPLL 106 GntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa + ++Gs+++p+i S s m+++ +sD + + GF+a++++ KIAA0817 107 A----SLSGSTrpPpIEAS-SGKMLLHLFSDANYN-----LLGFNASFRF 146 v<-* KIAA0817 147 S 147 SM00181: domain 1 of 13, from 148 to 177: score 11.6, E = 24 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C ++C+ + G+C++ C C pG+ g+ C KIAA0817 148 LCPgGCQSH-----GQCQpPGVCaCE-PGWGGpDCG 177 SM00181: domain 2 of 13, from 180 to 210: score 10.0, E = 33 *->eCa.pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* eC+ C+ + GtC ++ C+C pG+ g+ C KIAA0817 180 ECSaYCGSH-----GTCAspLGPCrCE-PGFLGrACD 210 SM00423: domain 1 of 9, from 568 to 620: score 2.3, E = 22 *->rCsqygvtsCseCllardpygCgWCssegrCtrg............e Cs y t+ s C + C WC +g+C+++++++++ + + + KIAA0817 568 YCSMY--TDHSVCSRDPE---CSWC--QGACQAApppgtplgacpaA 607 rCderrgsrqnwssgpssqCp<-* +C + ++ C KIAA0817 608 SCL----GLGRLLG----DCQ 620 SM00423: domain 2 of 9, from 787 to 839: score 15.1, E = 1.2 *->rCsqygvtsCseCllardpygCgWCssegrCtrg...erCderrgsr C+ y +sC Cl+ + CgWC +C ++++++C+ + + KIAA0817 787 SCTSY--SSCLGCLADQG---CGWCLTSATCHLRqggAHCGDDGAGG 828 qnwssgpssqCp<-* + ++ + Cp KIAA0817 829 SLLVL-VPTLCP 839 SM00423: domain 3 of 9, from 840 to 887: score 1.9, E = 24 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw C+ + ++C +C + + C W s++r ++ +C++r r + KIAA0817 840 LCEEH--RDCHACTQDPF---CEWHQSTSRKGDA-ACSRRGRGRGAL 880 ssgpssqCp<-* s ++Cp KIAA0817 881 KS--PEECP 887 SM00423: domain 4 of 9, from 889 to 931: score 23.8, E = 0.023 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw Csq +C++Cl+++ C+WC s+++C ++ + + KIAA0817 889 LCSQR--LTCEDCLANSSQ--CAWCQSTHTCFLFAAYL------ARY 925 ssgpssqCp<-* +g +C KIAA0817 926 PHG---GCR 931 SM00423: domain 5 of 9, from 945 to 1013: score 17.3, E = 0.76 *->rCsqygvtsCseCllardpygCgWCss.....egrCtrg........ C+ + +C eCl+++ CgWC ++++++ grC g+ +++ ++ KIAA0817 945 SCDGF--LTCHECLQSHE---CGWCGNednptLGRCLQGdfsgplgg 986 ............erCderrgsrqnwssgpssqCp<-* ++ + +++ + +++ w Cp KIAA0817 987 gncslwvgeglgLPVA----LPARWAY---ARCP 1013 SM00179: domain 1 of 2, from 1014 to 1055: score 45.6, E = 6.5e-09 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<- D+DEC+ + C++ + tC N++ SY+C+C+ Gy++++ +C KIAA0817 1014 DVDECrlglaRCHPRA---TCLNtPLSYEChCQRGYQgdgiSHCN 1055 * KIAA0817 - - SM00181: domain 3 of 13, from 1017 to 1055: score 28.7, E = 0.00079 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<- eC + C++ +tC++++ sy+C+C+ Gy+g++ ++C KIAA0817 1017 ECRlglaRCHPR-----ATCLntplSYEChCQ-RGYQGdgisHCN 1055 * KIAA0817 - - SM00181: domain 4 of 13, from 1057 to 1100: score 22.2, E = 0.074 *->eCa.pCsnGgtEqnGtCi...sytC.CpgpGytg............. C+++C++G +C +++ +tC C G+t + +++++ ++++ KIAA0817 1057 TCLeDCGHG------VCSgppDFTCvCD-LGWTSdlppptpapgppa 1096 .rCe<-* +rC KIAA0817 1097 pRCS 1100 SM00180: domain 1 of 4, from 1103 to 1148: score 16.2, E = 0.41 *->CdCnlpppvG...Cdp..tGqClnCkpnttGGrrCdderCapGyy.. C C+ +++C +++ G C+ C++ t G ++C+ rC+pG +++ KIAA0817 1103 CGCS-----FhshCRKrgPGFCDECQDWTWG-EHCE--RCRPGSFgn 1141 .....gC<-* ++++gC KIAA0817 1142 atgsrGC 1148 SM00181: domain 5 of 13, from 1110 to 1149: score 2.1, E = 1.6e+02 *->eCa.....pCsnGgtEqnGtCi....sytC..CpgpGytg......r C +++++ C+ +C++ + + +C++C+ pG g+ ++++ KIAA0817 1110 HCRkrgpgFCD--------ECQdwtwGEHCerCR-PGSFGnatgsrG 1147 Ce<-* C KIAA0817 1148 CR 1149 SM00181: domain 6 of 13, from 1150 to 1200: score 5.6, E = 81 *->eCa..........pCsnGgtEqnGtCi......sytC..CpgpGytg +C+ +++++++++ C+n G C +++++ +C+ C pGy+g KIAA0817 1150 PCQcnghgdprrgHCDNLS----GLCFcqdhteGAHCqlCS-PGYYG 1191 ......rCe<-* +++ +++C KIAA0817 1192 dpraggSCF 1200 SM00180: domain 2 of 4, from 1151 to 1199: score 42.3, E = 6.5e-08 *->CdCnlpppvG......Cdp.tGqClnCkpnttGGrrCdderCapGyy C+Cn +G++++++Cd +G C C+++t+G +C C pGyy KIAA0817 1151 CQCN---GHGdprrghCDNlSGLCF-CQDHTEG-AHCQ--LCSPGYY 1190 .......gC<-* ++++ +++C KIAA0817 1191 gdpraggSC 1199 SM00181: domain 7 of 13, from 1346 to 1385: score 8.6, E = 44 *->eCa.....pCsnGgtEqnGtCi.......sytC.CpgpGytg.rCe< C +++++ C ++C++ ++ + C+Cp +G+ g++C KIAA0817 1346 RCGsggpgSCPVP-----QECVpqdgaagAGLCrCP-QGWAGpHCR 1385 -* KIAA0817 - - SM00181: domain 8 of 13, from 1388 to 1421: score 2.4, E = 1.6e+02 *->eCa.pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + C + + GtC + C C+ +G+ g+ C KIAA0817 1388 LCPeNCNAHTG--AGTCNqsLGVCiCA-EGFGGpDCA 1421 SM00423: domain 6 of 9, from 1816 to 1856: score 7.3, E = 7.2 *->rCsqygvtsCseCllardpygCgWCssegrCtrg.....erCderrg +C+ + +s ++C +++ C WC +g+C +g++ ++ C+ KIAA0817 1816 PCRLL--SSPEACNQSGA---CTWC--HGACLSGdqahrLGCG---- 1851 srqnwssgpssqCp<-* +s C+ KIAA0817 1852 ---------GSPCS 1856 SM00423: domain 7 of 9, from 1864 to 1919: score 19.7, E = 0.42 *->rCsqygvtsCseCllardpyg...........CgWCss..egrCtrg +C+++ ++CseCl+++++ ++++++ ++++C WC++ +eg+C+ + KIAA0817 1864 ECRRL--RTCSECLARHPRTLqpgdgeastprCKWCTNcpEGACIGR 1908 .erCderrgsrqnwssgpssqCp<-* +++C++ ++ C KIAA0817 1909 nGSCTS------------ENDCR 1919 SM00423: domain 8 of 9, from 2000 to 2058: score 11.7, E = 2.6 *->rCsqygvtsCseCllardpyg....CgWCssegrCtrg......... +C+ + ++C++Cl + g+ ++C W ss ++C +++ + + KIAA0817 2000 PCHLL--PNCTSCLDSKGADGgwqhCVWSSSLQQCLSPsylplrcma 2044 erCderrgsrqnwssgpssqCp<-* + C++ +++ + ++C+ KIAA0817 2045 GGCGR-------LLR-GPESCS 2058 SM00423: domain 9 of 9, from 2060 to 2117: score 35.5, E = 7.5e-06 *->rCsqygvtsCseCllardpygCgWCss.....egrCtrg........ +C+q+ t C+ Cl +++ CgWC++++++++grC++g+ ++++++ KIAA0817 2060 GCAQA--TQCALCLRRPH---CGWCAWggqdgGGRCMEGglsgprdg 2101 erCderrgsrqnwssgpssqCp<-* C++ + ++w ++ +Cp KIAA0817 2102 LTCGR---PGASWAFL---SCP 2117 SM00179: domain 2 of 2, from 2118 to 2160: score 10.8, E = 0.076 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DEC ++++ C C++++ +Y+C+C+ Gyt ++ ++ C KIAA0817 2118 PEDECanghhDCNETQ---NCHDqPHGYECsCKTGYTmdnmtGLCR 2160 -* KIAA0817 - - SM00181: domain 9 of 13, from 2121 to 2160: score 21.1, E = 0.15 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eCa+++++C + + C++ +++y+C+C+ Gyt ++ ++ C KIAA0817 2121 ECAnghhDCNET-----QNCHdqphGYECsCK-TGYTMdnmtgLCR 2160 -* KIAA0817 - - SM00181: domain 10 of 13, from 2162 to 2190: score 15.9, E = 5.6 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* Ca++C nG C++ +C+C+ G+ g++C KIAA0817 2162 VCAqGCVNG------SCVePDHCrCH-FGFVGrNCS 2190 SM00180: domain 3 of 4, from 2178 to 2239: score 12.6, E = 0.82 *->CdCnl.pppvG........Cdp.........tGqClnCkpnttGGrr C C++++ G++ +++ +C+++++ + + +Cl C+ +t G + KIAA0817 2178 CRCHFgFV--GrncstecrCNRhsecagvgaRDHCLLCRNHTKG-SH 2221 CdderCapGyy.......gC<-* C+ +C+p + ++ ++++C KIAA0817 2222 CE--QCLPLFVgsavgggTC 2239 SM00181: domain 11 of 13, from 2200 to 2240: score 10.7, E = 29 *->eCa......pCsnGgtEqnGtCi....sytC..CpgpGytg...... eCa+ + ++ C C++++++ +C++C p + g+ +++ KIAA0817 2200 ECAgvgardHCL--------LCRnhtkGSHCeqCL-PLFVGsavggg 2237 rCe<-* +C KIAA0817 2238 TCR 2240 SM00181: domain 12 of 13, from 2241 to 2304: score 3.9, E = 1.1e+02 *->eCa.pCsnGgtEqnGtCi............................. +C+ C + +Ci++++ +++++++ + ++++ ++ +++ KIAA0817 2241 PCHaFCRGNS----HICIsrkelqmskgepkkysldpeeienwvteg 2283 ....sytC..CpgpGytg.rCe<-* ++++ C +C+ + +g+ Ce KIAA0817 2284 psedEAVCvnCQ-NNSYGeKCE 2304 SM00180: domain 4 of 4, from 2244 to 2317: score 7.9, E = 2 *->CdCnlpppvG....Cdp.............................. C G+++ C ++++ + +++++++ + ++++ ++ +++++ KIAA0817 2244 AFCR-----GnshiCISrkelqmskgepkkysldpeeienwvtegps 2285 ..tGqClnCkpnttGGrrCdderCapGyy....gC<-* ++ +C+nC+ n G ++C+ C+ Gy+ ++ C KIAA0817 2286 edEAVCVNCQNNSYG-EKCE--SCLQGYFlldgKC 2317 SM00181: domain 13 of 13, from 2328 to 2382: score 2.4, E = 1.5e+02 *->eCa.......pCsnGgtEqnGtCi...........sytC..CpgpGy C ++++++ pC+n+ + GtC++++++++++ y+C +C+ + + KIAA0817 2328 TCNeqdgtgcPCQNNTET--GTCQgsspsdrrdcyKYQCakCR-ESF 2371 tg......rCe<-* +g++ ++++C KIAA0817 2372 HGsplggqQCY 2382 //