# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05647s1.fasta.huge -Q ../query/KIAA0810.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0810, 824 aa vs ./tmplib.23663 library 1986681 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.2529+/-0.00626; mu= 15.3460+/- 0.426 mean_var=139.3371+/-33.638, 0's: 0 Z-trim: 3 B-trim: 48 in 1/39 Lambda= 0.108653 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0668 ( 742 res) hk02329 ( 742) 1036 174.6 3.4e-44 >>KIAA0668 ( 742 res) hk02329 (742 aa) initn: 1150 init1: 757 opt: 1036 Z-score: 885.2 bits: 174.6 E(): 3.4e-44 Smith-Waterman score: 1215; 34.620% identity (60.399% similar) in 803 aa overlap (63-822:26-740) 40 50 60 70 80 90 KIAA08 YTYALSSSYSSDALDFETEHKLDPVFDSPRMSRRSLRLATTACTLGDGEAVGADSGTSSA ::::: :: : . :: .. ....:.: : KIAA06 LRGVPVWAAGAFRFSSGEESTSHLIMSRRSQRL--TRYSQGDDDGSSSSGGSSVA 10 20 30 40 50 100 110 120 130 140 KIAA08 VS----LKNRAARTTKQRRSTNKSAFSINHVSRQVTSSGVSYGGTVSLQDAVTRRPPVLD : .:. :: : :.:.: . .: . :. :. .. . : .. KIAA06 GSQSTLFKDSPLRTLK-RKSSNMKRLSP---APQLGPSSDAHTSYYS--------ESLVH 60 70 80 90 100 150 160 170 180 190 200 KIAA08 ESWIREQTTVDHFWGLDDDGDLKGGNKAAIQGNGDVGVAAATAHNGFSCSNCSMLSERKD :::. ....... :: . :. :. : . .: : : : :: KIAA06 ESWFPPRSSLEEL-----HGDANWGE--------DLRVRRRRGTGGSESSRASGLVGRKA 110 120 130 140 210 220 230 240 250 260 KIAA08 VLTAHPAAPGPVSRVYSRDRNQKCDDCKGKRHLDAHPGRAGTLWHIWACAGYFLLQILRR . .. : :: . :: : .: . . . :: KIAA06 TEDFLGSSSG-----YSSE-----DDYVGYSDVDQQSSSSR----------------LR- 150 160 170 180 270 280 290 300 310 320 KIAA08 IGAVGQAVSRTAWSALWLAVVAPGKAASGVFWWLGIGWYQFVTLISWLNVFLLTRCLRNI .:::: : : ::.....::. ..:: : ::...: : :.::.::: . .. KIAA06 -----SAVSR-AGSLLWMVATSPGRLFRLLYWWAGTTWYRLTTAASLLDVFVLTRRFSSL 190 200 210 220 230 330 340 350 360 370 380 KIAA08 CKFLVLLIPLFLLLAGLSLRGQGNFF-----SFLPVL-NWASMHRTQRVDDPQDVFKPTT :: .:.:: :::. :. : :. .: :.: .: . . ..: :. . KIAA06 KTFLWFLLPL-LLLTCLTY-GAWYFYPYGLQTFHPALVSWWAAKDSRRPDEGWE------ 240 250 260 270 280 390 400 410 420 430 440 KIAA08 SRLKQP-LQGDSEAFPWHWMSGVEQQVASLSGQCHHHGENLRELTTLLQKLQARVDQM-E .: ..: .:..... :: :.. : . . . : .. . :..:. : . KIAA06 ARDSSPHFQAEQRV-----MSRVHSLERRLEALAAEFSSNWQKEAMRLERLELRQGAPGQ 290 300 310 320 330 340 450 460 470 480 KIAA08 GGAAGPS-----------ASVRDAVGQPPRETDFMAFHQEH--EVRMSHL---EDILGKL ::..: : .: :.:. . . . : ::. .: : ::.. :. KIAA06 GGGGGLSHEDTLALLEGLVSRREAALKEDFRRETAARIQEELSALRAEHQQDSEDLFKKI 350 360 370 380 390 400 490 500 510 520 530 KIAA08 REKSEAIQKELEQTKQKTISAVGEQLLPT-VEHLQLELDQL---KSELSSWRHVKTGC-- . :. . ...: :.. : . :.. . :..:. ::: ..::.. ... KIAA06 VRASQESEARIQQLKSEWQSMTQESFQESSVKELRRLEDQLAGLQQELAALALKQSSVAE 410 420 430 440 450 460 540 550 560 570 580 590 KIAA08 ------ETVDAVQERVDVQVREMVKLLFSEDQQGGSLEQLLQRFSSQFVSKGDLQTMLRD . ..::.. :. : .. .... ::. :::: ..:..::. KIAA06 EVGLLPQQIQAVRDDVESQFPAWISQFLARG--GGGRVGLLQRE--------EMQAQLRE 470 480 490 500 510 600 610 620 630 640 KIAA08 LQLQILRNVTHHVSVTKQLPTSEAVVS---AVSEAGASGITEAQARAIVNSALKLYSQDK :. .:: ::. . . ::..: .... :. :.:: :.. ::..::. ::.:. KIAA06 LESKILT----HVAEMQGKSAREAAASLSLTLQKEGVIGVTEEQVHHIVKQALQRYSEDR 520 530 540 550 560 650 660 670 680 690 700 KIAA08 TGMVDFALESGGGSILSTRCSETYETKTALMSLFGIPLWYFSQSPRVVIQPDIYPGNCWA :..:.::::::.:..::::::::::::::.::::::::: ::::::..:::..:::::: KIAA06 IGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWA 570 580 590 600 610 620 710 720 730 740 750 760 KIAA08 FKGSQGYLVVRLSMMIHPAAFTLEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLG :.: ::. ::::: :.:.: ::::.::.:::...:::::::::..:.... :.:: ::: KIAA06 FQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLG 630 640 650 660 670 680 770 780 790 800 810 820 KIAA08 QFTYDQDGESLQMFQALKRPDDTAFQIVELRIFSNWGHPEYTCLYRFRVHGEPVK .:::::::: .: :. .. : ...:.:::::..:::::::::.::::::::: KIAA06 KFTYDQDGEPIQTFH-FQAPTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH 690 700 710 720 730 740 824 residues in 1 query sequences 1986681 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:17:01 2008 done: Thu Dec 18 15:17:01 2008 Total Scan time: 0.610 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]