hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13405231/chunk_1/iprscan-20080502-13405231.nocrc
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Query sequence: KIAA0809
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                  85.3    7.4e-21   1
SM00490                                                  74.1    1.8e-17   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     185   438 ..     1   219 []    85.3  7.4e-21
SM00490      1/1     669   772 ..     1    86 []    74.1  1.8e-17

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 185 to 438: score 85.3, E = 7.4e-21
                   *->gf.klrpyQkeaipwlleg.............rdvilaapTGsGKTl
                      + +   p+Q  +i++l+++  ++ ++ +++++ ++ila+ +G+GKTl
    KIAA0809   185    LArAVKPHQIGGIRFLYDNlveslerfktssgFGCILAHSMGLGKTL 231  

                   afllpllellkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpsl
                    ++++ ++ l ++        + ++vL +vP     ++w  e++ ++p+ 
    KIAA0809   232 -QVISFIDVLFRHT-------PVKTVLAIVP-VNTLQNWLAEFNMWLPP- 271  

                   gvyfv.............evlkvvglygG.skt.ke.keqlrklksgktd
                       ++  + ++++++  +++ +v ++ ++ kt + + + ++++ s+   
    KIAA0809   272 ----PealpadnkpeevqPRFFKVHILNDeHKTmASrAKVMADWVSEG-G 316  

                   ilvtTpg.........................rLldll.ngkg.......
                   +l++ ++  +  + +++  ++++++++++++++++dl +++++++ +++ 
    KIAA0809   317 VLLMGYEmyrlltlkksfatgrpkktkkrshpVIIDLDeEDRQqefrref 366  

                   ...lsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrll
                   ++ l  +  d+vi+DE+Hr+++        ++++   l + +  +r+r++
    KIAA0809   367 ekaLCRpGPDVVICDEGHRIKN-------CQASTSQaLKNIR--SRRRVV 407  

                   lSATppeienllklflnlpelfpnpvfisvgftlepieqf<-*
                   l++ p  ++n+l +++        + f++++f l  +++f   
    KIAA0809   408 LTGYP--LQNNLIEYWC------MVDFVRPDF-LGTRQEF    438  

SM00490: domain 1 of 1, from 669 to 772: score 74.1, E = 1.8e-17
                   *->delaelLkellkd..............pgikvarlHGglsqeeReei
                        ++e+L ++    ++++++++ ++   +i+++rl+G++++ eRe++
    KIAA0809   669    ALIEEFLGKREVPcppgtegqgaqkwvRNISYFRLDGSTPAFERERL 715  

                   lekFrkgki....kvLvaTdvaerGlDipgvdlVInydlpwspasyiQRi
                   +++F++  + ++  +L++T+++ +G+++ g+++V+ +d+ w+p  + Q++
    KIAA0809   716 INQFNDPSNlttwLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAV 765  

                   GRaGRaG<-*
                    R+ R+G   
    KIAA0809   766 CRVYRYG    772  

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