hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13405231/chunk_1/iprscan-20080502-13405231.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: KIAA0809
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00176.13.ls SNF2 family N-terminal domain 250.8 2.7e-72 1
PF00176.13.fs SNF2 family N-terminal domain 248.9 9.7e-72 1
PF00271.21.fs Helicase conserved C-terminal domain 72.9 1.1e-20 1
PF00271.21.ls Helicase conserved C-terminal domain 74.9 2.4e-19 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00176.13.fs 1/1 192 546 .. 1 355 [] 248.9 9.7e-72
PF00176.13.ls 1/1 192 546 .. 1 355 [] 250.8 2.7e-72
PF00271.21.fs 1/1 692 772 .. 1 76 [] 72.9 1.1e-20
PF00271.21.ls 1/1 692 772 .. 1 76 [] 74.9 2.4e-19
Alignments of top-scoring domains:
PF00176.13.fs: domain 1 of 1, from 192 to 546: score 248.9, E = 9.7e-72
*->YQleGvnWLis.lyknlvketdslglggILADEMGLGKTlQtIslla
+Q+ G+++L+++l+++l + + s g g+ILA+ MGLGKTlQ+Is++
KIAA0809 192 HQIGGIRFLYDnLVESLERFKTSSGFGCILAHSMGLGKTLQVISFID 238
ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn
l + p ++L ++P +tl+nWl Ef w+p + +++ ++
KIAA0809 239 VLFRHTPVK-----TVLAIVPVNTLQNWLAEFNMWLP-PPEALPADNKPE 282
srdqd...............rkdellrnvlkdggrlkfdvlitsYeiirk
+ + + + ++++++ +++++ ++++ g +vl+ +Ye++r
KIAA0809 283 EVQPRffkvhilndehktmaSRAKVMADWVSEG-----GVLLMGYEMYRL 327
NkLl...............................kdkdeLkklfinw..
L +++ +++++++++++++ + +++++++ + e++k + ++
KIAA0809 328 --LTlkksfatgrpkktkkrshpviidldeedrqqEFRREFEK--ALCrp 373
..ryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE
+++ vi+DEG HriKN+++ + s+alk+++ +++R+ LTG PlQNnL E
KIAA0809 374 gpDVVICDEG-HRIKNCQAST--SQALKNIR-SRRRVVLTGYPLQNNLIE 419
lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefL
+w++++F++P+++g++ ++F ++f++pi++g++ d+t
KIAA0809 420 YWCMVDFVRPDFLGTR-------QEFSNMFERPILNGQC----IDST--- 455
rykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel
+v+++ + + Lh +l f++RR + + +Lp+ K e v+ ++l
KIAA0809 456 --PQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPA--KEENVILVRL 501
sklQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrK
sk+Q++lY++f ++ + + + g ++ ++l ++ K
KIAA0809 502 SKIQRDLYTQFM---DRFRDCGSS-----GWLG-----LNPLKAFCVCCK 538
icNfHPyLf<-*
i+N HP+++
KIAA0809 539 IWN-HPDVL 546
PF00176.13.ls: domain 1 of 1, from 192 to 546: score 250.8, E = 2.7e-72
*->YQleGvnWLis.lyknlvketdslglggILADEMGLGKTlQtIslla
+Q+ G+++L+++l+++l + + s g g+ILA+ MGLGKTlQ+Is++
KIAA0809 192 HQIGGIRFLYDnLVESLERFKTSSGFGCILAHSMGLGKTLQVISFID 238
ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn
l + p ++L ++P +tl+nWl Ef w+p + +++ ++
KIAA0809 239 VLFRHTPVK-----TVLAIVPVNTLQNWLAEFNMWLP-PPEALPADNKPE 282
srdqd...............rkdellrnvlkdggrlkfdvlitsYeiirk
+ + + + ++++++ +++++ ++++ g +vl+ +Ye++r
KIAA0809 283 EVQPRffkvhilndehktmaSRAKVMADWVSEG-----GVLLMGYEMYRL 327
NkLl...............................kdkdeLkklfinw..
L +++ +++++++++++++ + +++++++ + e++k + ++
KIAA0809 328 --LTlkksfatgrpkktkkrshpviidldeedrqqEFRREFEK--ALCrp 373
..ryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE
+++ vi+DEG HriKN+++ + s+alk+++ +++R+ LTG PlQNnL E
KIAA0809 374 gpDVVICDEG-HRIKNCQAST--SQALKNIR-SRRRVVLTGYPLQNNLIE 419
lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefL
+w++++F++P+++g++ ++F ++f++pi++g++ d+t
KIAA0809 420 YWCMVDFVRPDFLGTR-------QEFSNMFERPILNGQC----IDST--- 455
rykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel
+v+++ + + Lh +l f++RR + + +Lp+ K e v+ ++l
KIAA0809 456 --PQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPA--KEENVILVRL 501
sklQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrK
sk+Q++lY++f ++ + + + g ++ ++l ++ K
KIAA0809 502 SKIQRDLYTQFM---DRFRDCGSS-----GWLG-----LNPLKAFCVCCK 538
icNfHPyLf<-*
i+N HP+++
KIAA0809 539 IWN-HPDVL 546
PF00271.21.fs: domain 1 of 1, from 692 to 772: score 72.9, E = 1.1e-20
*->ll.epgikvarlhGglsqeeReeilekFrngks....kvLvaTdvag
+ ++i+++rl+G++++ eRe+++++F++ ++ ++ +L++T+++
KIAA0809 692 QKwVRNISYFRLDGSTPAFERERLINQFNDPSNlttwLFLLSTRAGC 738
rGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
+G+++ ++n V+ +d+ wnp + Q++ R++R G
KIAA0809 739 LGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 772
PF00271.21.ls: domain 1 of 1, from 692 to 772: score 74.9, E = 2.4e-19
*->ll.epgikvarlhGglsqeeReeilekFrngks....kvLvaTdvag
+ ++i+++rl+G++++ eRe+++++F++ ++ ++ +L++T+++
KIAA0809 692 QKwVRNISYFRLDGSTPAFERERLINQFNDPSNlttwLFLLSTRAGC 738
rGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
+G+++ ++n V+ +d+ wnp + Q++ R++R G
KIAA0809 739 LGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 772
//