hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13405231/chunk_1/iprscan-20080502-13405231.nocrc
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Query sequence: KIAA0809
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00176.13.ls SNF2 family N-terminal domain                250.8    2.7e-72   1
PF00176.13.fs SNF2 family N-terminal domain                248.9    9.7e-72   1
PF00271.21.fs Helicase conserved C-terminal domain          72.9    1.1e-20   1
PF00271.21.ls Helicase conserved C-terminal domain          74.9    2.4e-19   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00176.13.fs   1/1     192   546 ..     1   355 []   248.9  9.7e-72
PF00176.13.ls   1/1     192   546 ..     1   355 []   250.8  2.7e-72
PF00271.21.fs   1/1     692   772 ..     1    76 []    72.9  1.1e-20
PF00271.21.ls   1/1     692   772 ..     1    76 []    74.9  2.4e-19

Alignments of top-scoring domains:
PF00176.13.fs: domain 1 of 1, from 192 to 546: score 248.9, E = 9.7e-72
                   *->YQleGvnWLis.lyknlvketdslglggILADEMGLGKTlQtIslla
                      +Q+ G+++L+++l+++l + + s g g+ILA+ MGLGKTlQ+Is++ 
    KIAA0809   192    HQIGGIRFLYDnLVESLERFKTSSGFGCILAHSMGLGKTLQVISFID 238  

                   ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn
                    l +  p       ++L ++P +tl+nWl Ef  w+p +  +++    ++
    KIAA0809   239 VLFRHTPVK-----TVLAIVPVNTLQNWLAEFNMWLP-PPEALPADNKPE 282  

                   srdqd...............rkdellrnvlkdggrlkfdvlitsYeiirk
                   +  +   + +  ++++++   +++++ ++++ g     +vl+ +Ye++r 
    KIAA0809   283 EVQPRffkvhilndehktmaSRAKVMADWVSEG-----GVLLMGYEMYRL 327  

                   NkLl...............................kdkdeLkklfinw..
                     L  +++  +++++++++++++   + +++++++  + e++k  +  ++
    KIAA0809   328 --LTlkksfatgrpkktkkrshpviidldeedrqqEFRREFEK--ALCrp 373  

                   ..ryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE
                   +++ vi+DEG HriKN+++ +  s+alk+++ +++R+ LTG PlQNnL E
    KIAA0809   374 gpDVVICDEG-HRIKNCQAST--SQALKNIR-SRRRVVLTGYPLQNNLIE 419  

                   lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefL
                   +w++++F++P+++g++       ++F ++f++pi++g++     d+t   
    KIAA0809   420 YWCMVDFVRPDFLGTR-------QEFSNMFERPILNGQC----IDST--- 455  

                   rykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel
                       +v+++  + + Lh +l  f++RR  + +  +Lp+  K e v+ ++l
    KIAA0809   456 --PQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPA--KEENVILVRL 501  

                   sklQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrK
                   sk+Q++lY++f    ++  + + +     g ++      ++l ++    K
    KIAA0809   502 SKIQRDLYTQFM---DRFRDCGSS-----GWLG-----LNPLKAFCVCCK 538  

                   icNfHPyLf<-*
                   i+N HP+++   
    KIAA0809   539 IWN-HPDVL    546  

PF00176.13.ls: domain 1 of 1, from 192 to 546: score 250.8, E = 2.7e-72
                   *->YQleGvnWLis.lyknlvketdslglggILADEMGLGKTlQtIslla
                      +Q+ G+++L+++l+++l + + s g g+ILA+ MGLGKTlQ+Is++ 
    KIAA0809   192    HQIGGIRFLYDnLVESLERFKTSSGFGCILAHSMGLGKTLQVISFID 238  

                   ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn
                    l +  p       ++L ++P +tl+nWl Ef  w+p +  +++    ++
    KIAA0809   239 VLFRHTPVK-----TVLAIVPVNTLQNWLAEFNMWLP-PPEALPADNKPE 282  

                   srdqd...............rkdellrnvlkdggrlkfdvlitsYeiirk
                   +  +   + +  ++++++   +++++ ++++ g     +vl+ +Ye++r 
    KIAA0809   283 EVQPRffkvhilndehktmaSRAKVMADWVSEG-----GVLLMGYEMYRL 327  

                   NkLl...............................kdkdeLkklfinw..
                     L  +++  +++++++++++++   + +++++++  + e++k  +  ++
    KIAA0809   328 --LTlkksfatgrpkktkkrshpviidldeedrqqEFRREFEK--ALCrp 373  

                   ..ryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE
                   +++ vi+DEG HriKN+++ +  s+alk+++ +++R+ LTG PlQNnL E
    KIAA0809   374 gpDVVICDEG-HRIKNCQAST--SQALKNIR-SRRRVVLTGYPLQNNLIE 419  

                   lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefL
                   +w++++F++P+++g++       ++F ++f++pi++g++     d+t   
    KIAA0809   420 YWCMVDFVRPDFLGTR-------QEFSNMFERPILNGQC----IDST--- 455  

                   rykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel
                       +v+++  + + Lh +l  f++RR  + +  +Lp+  K e v+ ++l
    KIAA0809   456 --PQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPA--KEENVILVRL 501  

                   sklQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrK
                   sk+Q++lY++f    ++  + + +     g ++      ++l ++    K
    KIAA0809   502 SKIQRDLYTQFM---DRFRDCGSS-----GWLG-----LNPLKAFCVCCK 538  

                   icNfHPyLf<-*
                   i+N HP+++   
    KIAA0809   539 IWN-HPDVL    546  

PF00271.21.fs: domain 1 of 1, from 692 to 772: score 72.9, E = 1.1e-20
                   *->ll.epgikvarlhGglsqeeReeilekFrngks....kvLvaTdvag
                      +   ++i+++rl+G++++ eRe+++++F++ ++ ++  +L++T+++ 
    KIAA0809   692    QKwVRNISYFRLDGSTPAFERERLINQFNDPSNlttwLFLLSTRAGC 738  

                   rGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +G+++ ++n V+ +d+ wnp  + Q++ R++R G   
    KIAA0809   739 LGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG    772  

PF00271.21.ls: domain 1 of 1, from 692 to 772: score 74.9, E = 2.4e-19
                   *->ll.epgikvarlhGglsqeeReeilekFrngks....kvLvaTdvag
                      +   ++i+++rl+G++++ eRe+++++F++ ++ ++  +L++T+++ 
    KIAA0809   692    QKwVRNISYFRLDGSTPAFERERLINQFNDPSNlttwLFLLSTRAGC 738  

                   rGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +G+++ ++n V+ +d+ wnp  + Q++ R++R G   
    KIAA0809   739 LGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG    772  

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