# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk04477s1.fasta.huge -Q ../query/KIAA0808.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0808, 530 aa
 vs ./tmplib.23663 library

1986975 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.3731+/-0.0082; mu= -10.1761+/- 0.552
 mean_var=355.4439+/-86.924, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.068028

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0737  ( 629 res)   hk03869                     ( 629)  928 104.7 2.1e-23


>>KIAA0737  ( 629 res)   hk03869                          (629 aa)
 initn: 1060 init1: 748 opt: 928  Z-score: 512.2  bits: 104.7 E(): 2.1e-23
Smith-Waterman score: 991;  36.349% identity (59.211% similar) in 608 aa overlap (36-518:6-602)

          10        20        30        40           50        60  
KIAA08 DVRFYPPPAQPAAAPDAPCLGPSPCLDPYYCNKFD---GENMYMSMTEPSQDYVPASQSY
                                     : :..   :.. :...: ::. .. .....
KIAA07                          DGGSGCVKMEFPGGNDNYLTITGPSHPFLSGAETF
                                        10        20        30     

             70        80        90       100        110           
KIAA08 PGPSLESEDFNIPPITPPSLPDHSLVHLNEVESGYHSLCHPMN-HNGLLP--FHPQNMDL
         ::: .:.:.::::.  : :  ::. ...: . . .:  : . ..: .   .  :..:.
KIAA07 HTPSLGDEEFEIPPISLDSDP--SLA-VSDVVGHFDDLADPSSSQDGSFSAQYGVQTLDM
          40        50           60        70        80        90  

     120       130       140       150       160       170         
KIAA08 PEITVSNMLGQDGTLLSNSISVMPDIRNPEGTQYSSHPQMAAMRPRGQPADIRQQPGMMP
       :   . ... : : :::.....  :. .  :::::..: ..   :    .:. .  :.: 
KIAA07 PVGMTHGLMEQGGGLLSGGLTM--DLDHSIGTQYSANPPVTIDVPM---TDMTS--GLMG
            100       110         120       130          140       

     180       190       200       210       220       230         
KIAA08 HGQLTTINQSQLSAQLGLNMGGSNVPHNSPSPPGSKSATPSPSSSVHEDEGDDTSKINGG
       :.:::::.::.::.::::..::...   . ::    :.::::.::.:::  .:  .   .
KIAA07 HSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPTSSLHEDGVEDFRRQLPS
         150       160       170       180       190       200     

     240       250       260       270       280       290         
KIAA08 EKRPASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIV
       .:  . . ::: :.:::.::::::::::::::::::::::::::::::::::::::::::
KIAA07 QKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIV
         210       220       230       240       250       260     

     300       310       320       330       340             350   
KIAA08 ASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYSEPVDV------KTSQPP
       :::::.::::::::::.::::::::::: ::::. .   ..  : :..      .: .::
KIAA07 ASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPSPP
         270       280       290       300       310       320     

                360       370          380           390           
KIAA08 QLI-----NSKPSVFHGPSQAHSALY---LSSHYHQQP----GMNPHLTA------MHPS
        .      .  :. .. :. . : .    :::.  .:     : .:..:       : ::
KIAA07 PMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAGGQPNITKLIITKQMLPS
         330       340       350       360       370       380     

                     400                      410                  
KIAA08 ------------LPRNIAP--------------KPNNQMP-VTVSI----------ANMA
                   .: ...               .:..:   :: :.          :.: 
KIAA07 SITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQIVTRSVLQAAAAAAAAASMQ
         390       400       410       420       430       440     

      420             430        440        450                460 
KIAA08 VSPP----PPLQI--SPPLHQHLN-MQQHQPL-TMQQPLGNQL---------PMQVQSAL
       . ::    ::::   .:: .:... .::  :: .::::  ...         :.:..: .
KIAA07 LPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPPQKVRINLQQQPPPLQIKS-V
         450       460       470       480       490       500     

             470                      480        490               
KIAA08 HSPTMQQGFTL---------------QPDYQTIINPTS-TAAQVVTQAMEYV--------
         ::...  ::               .:. .:.  :.  :  ...:...  :        
KIAA07 PLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPSPETICEMITDVVPEVESPSQMDV
          510       520       530       540       550       560    

                        500       510       520       530          
KIAA08 -----------------RSGCRNPPPQPVDWNNDYCSSGGMQRDKALYLT          
                        ::::.:::    ::.:.:::.                      
KIAA07 ELVSGSPVALSPQPRCVRSGCENPPIVSKDWDNEYCSNECVVKHCRDVFLAWVASRNSNT
          570       580       590       600       610       620    

KIAA07 VVFVK
            




530 residues in 1 query   sequences
1986975 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:16:55 2008 done: Thu Dec 18 15:16:56 2008
 Total Scan time:  0.460 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]